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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlamydiae
Anticodon = GCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782285 (5 seq.)
>W1711502173
MKSK01000006
Chlamydiota
Chlamydiales bacterium 38-26 [MKSK]
141037
141111
+
Cys
GCA
[ENA]
¡û
>W141229853
BASK01001308
Chlamydiota
Neochlamydia sp. S13 [BASK]
10401
10473
+
Cys
GCA
[ENA]
¡û
>PL191000001
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
57755
57827
+
Cys
GCA
[ENA]
¡û
>W1511358791
JRXI01000065
Chlamydiota
Neochlamydia sp. TUME1 [JRXI]
2680
2608
-
Cys
GCA
[ENA]
¡û
>W1511364951
JSDQ01000083
Chlamydiota
Neochlamydia sp. EPS4 [JSDQ]
11646
11718
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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