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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlamydiae
Anticodon = GTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184204 (23 seq.)
>W1711408065
MGLP01000017
Chlamydiota
Chlamydiae bacterium GWC2_50_10 [MGLP]
38272
38197
-
Asp
GTC
[ENA]
¡û
>C017961
BX908798
Chlamydiota
Candidatus Protochlamydia amoebophila UWE25 [BX908798]
958105
958032
-
Asp
GTC
[Ensembl]
¡û
>WENV181167800
OEIU01077921
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
409
336
-
Asp
GTC
[ENA]
¢þ
>W141229856
BASK01001309
Chlamydiota
Neochlamydia sp. S13 [BASK]
31075
31150
+
Asp
GTC
[ENA]
¡û
>W141229888
BASL01000690
Chlamydiota
Candidatus Protochlamydia sp. R18 [BASL]
14208
14133
-
Asp
GTC
[ENA]
¡û
>W141264382
CCEJ010000005
Chlamydiota
Criblamydia sequanensis [CCEJ]
27579
27654
+
Asp
GTC
[ENA]
¡û
>PL191000004
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
145328
145253
-
Asp
GTC
[ENA]
¡û
>W1910725389
MGLT01000044
Chlamydiota
Chlamydiae bacterium RIFCSPHIGHO2_02_FULL_49_29 [MGLT]
3588
3663
+
Asp
GTC
[ENA]
¡û
>W1910725405
MGLU01000007
Chlamydiota
Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_27_8 [MGLU]
7214
7289
+
Asp
GTC
[ENA]
¡û
>W1910725514
MGLX01000043
Chlamydiota
Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_32 [MGLX]
3505
3580
+
Asp
GTC
[ENA]
¡û
>W1910725553
MGLZ01000008
Chlamydiota
Chlamydiae bacterium RIFCSPLOWO2_01_FULL_28_7 [MGLZ]
11125
11200
+
Asp
GTC
[ENA]
¡û
>W1910725634
MGMC01000004
Chlamydiota
Chlamydiae bacterium RIFCSPLOWO2_02_FULL_49_12 [MGMC]
8327
8402
+
Asp
GTC
[ENA]
¡û
>W1910725709
MGME01000005
Chlamydiota
Chlamydiae bacterium RIFCSPLOWO2_12_FULL_49_12 [MGME]
3596
3671
+
Asp
GTC
[ENA]
¡û
>W10107290
ACZE01000004
Chlamydiota
Parachlamydia acanthamoebae str. Hall's coccus [ACZE]
146503
146578
+
Asp
GTC
[ENA]
¡û
>W1510004650
BAWW01000008
Chlamydiota
Parachlamydia acanthamoebae Bn9 [BAWW]
239903
239828
-
Asp
GTC
[ENA]
¡û
>W1510667339
CWGJ01000026
Chlamydiota
Estrella lausannensis CRIB-30 [CWGJ]
182857
182782
-
Asp
GTC
[ENA]
¡û
>W11109579
ACZE01000004
Chlamydiota
Parachlamydia acanthamoebae str. Hall's coccus [ACZE]
146503
146578
+
Asp
GTC
[ENA]
¡û
>C11116427
FR872580
Chlamydiota
Parachlamydia acanthamoebae UV-7 [FR872580]
2127414
2127339
-
Asp
GTC
[Ensembl]
¡û
>W1511358787
JRXI01000058
Chlamydiota
Neochlamydia sp. TUME1 [JRXI]
2749
2824
+
Asp
GTC
[ENA]
¡û
>W1511360564
JSAM01000078
Chlamydiota
Parachlamydia acanthamoebae OEW1 [JSAM]
7866
7791
-
Asp
GTC
[ENA]
¡û
>W1511360600
JSAN01000057
Chlamydiota
Candidatus Protochlamydia amoebophila amoebophila EI2 [JSAN]
10453
10378
-
Asp
GTC
[ENA]
¡û
>W1511364954
JSDQ01000089
Chlamydiota
Neochlamydia sp. EPS4 [JSDQ]
19307
19232
-
Asp
GTC
[ENA]
¡û
>W1710064149
BCPZ01000243
Chlamydiota
Candidatus Protochlamydia sp. W-9 [BCPZ]
9617
9542
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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