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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlamydiae
Anticodon = GTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281928 (8 seq.)
>C017961
BX908798
Chlamydiota
Candidatus Protochlamydia amoebophila UWE25 [BX908798]
958105
958032
-
Asp
GTC
[Ensembl]
¡û
>W141229856
BASK01001309
Chlamydiota
Neochlamydia sp. S13 [BASK]
31075
31150
+
Asp
GTC
[ENA]
¡û
>W141229888
BASL01000690
Chlamydiota
Candidatus Protochlamydia sp. R18 [BASL]
14208
14133
-
Asp
GTC
[ENA]
¡û
>PL191000004
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
145328
145253
-
Asp
GTC
[ENA]
¡û
>W1511358787
JRXI01000058
Chlamydiota
Neochlamydia sp. TUME1 [JRXI]
2749
2824
+
Asp
GTC
[ENA]
¡û
>W1511360600
JSAN01000057
Chlamydiota
Candidatus Protochlamydia amoebophila amoebophila EI2 [JSAN]
10453
10378
-
Asp
GTC
[ENA]
¡û
>W1511364954
JSDQ01000089
Chlamydiota
Neochlamydia sp. EPS4 [JSDQ]
19307
19232
-
Asp
GTC
[ENA]
¡û
>W1710064149
BCPZ01000243
Chlamydiota
Candidatus Protochlamydia sp. W-9 [BCPZ]
9617
9542
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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