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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlamydiae
Anticodon = TAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.327014 (26 seq.)
>C017960
BX908798
Chlamydiota
Candidatus Protochlamydia amoebophila UWE25 [BX908798]
958190
958118
-
Val
TAC
[Ensembl]
¡û
>WENV180342833
OBLJ01151978
[OBLJ] soil metagenome; Clay
239
167
-
Val
TAC
[ENA]
¢þ
>W141229887
BASL01000690
Chlamydiota
Candidatus Protochlamydia sp. R18 [BASL]
14292
14220
-
Val
TAC
[ENA]
¡û
>W141265949
CCJF01000005
Chlamydiota
Candidatus Protochlamydia massiliensis 'Diamant' [CCJF]
1952028
1952103
+
Val
TAC
[ENA]
¡û
>W141273158
CCSC01000001
Chlamydiota
Candidatus Rubidus massiliensis 'Rubis' [CCSC]
1942766
1942838
+
Val
TAC
[ENA]
¡û
>WENV170558055
CXWL01047796
[CXWL] groundwater metagenome; biofilm material
297
224
-
Val
TAC
[ENA]
¢þ
>WENV170575427
FLZN01000007
[FLZN] jellyfish metagenome; jellyfish
50837
50911
+
Val
TAC
[ENA]
¢þ
>WENV170575463
FLZO01000010
[FLZO] jellyfish metagenome; jellyfish
50837
50911
+
Val
TAC
[ENA]
¢þ
>WENV170596476
FUHP01000007
[FUHP] jellyfish metagenome; jellyfish
80509
80435
-
Val
TAC
[ENA]
¢þ
>WENV170634710
JAHE01033358
[JAHE] sediment metagenome; lake sediment
75
1
-
Val
TAC
[ENA]
¢þ
>WENV171003983
OBEO01000007
[OBEO] jellyfish metagenome; jellyfish
50837
50911
+
Val
TAC
[ENA]
¢þ
>PL191000003
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
145411
145339
-
Val
TAC
[ENA]
¡û
>SRA1044931
SRR035092.374790
454 Sequencing (SRP001813)
255
183
-
Val
TAC
[SRA]
>W10107289
ACZE01000004
Chlamydiota
Parachlamydia acanthamoebae str. Hall's coccus [ACZE]
146414
146486
+
Val
TAC
[ENA]
¡û
>W1510004649
BAWW01000008
Chlamydiota
Parachlamydia acanthamoebae Bn9 [BAWW]
239992
239920
-
Val
TAC
[ENA]
¡û
>W1510014334
BBPT01000001
Chlamydiota
Parachlamydiaceae bacterium HS-T3 [BBPT]
233684
233612
-
Val
TAC
[ENA]
¡û
>W1510667338
CWGJ01000026
Chlamydiota
Estrella lausannensis CRIB-30 [CWGJ]
182938
182866
-
Val
TAC
[ENA]
¡û
>W11109578
ACZE01000004
Chlamydiota
Parachlamydia acanthamoebae str. Hall's coccus [ACZE]
146414
146486
+
Val
TAC
[ENA]
¡û
>WENV040706
AACY022102558
Marine microbial communities from Global Ocean Sampling (GOS)
322
247
-
Val
TAC
[ENA]
>C11116426
FR872580
Chlamydiota
Parachlamydia acanthamoebae UV-7 [FR872580]
2127503
2127431
-
Val
TAC
[Ensembl]
¡û
>W1511358786
JRXI01000058
Chlamydiota
Neochlamydia sp. TUME1 [JRXI]
2666
2738
+
Val
TAC
[ENA]
¡û
>W1511360563
JSAM01000078
Chlamydiota
Parachlamydia acanthamoebae OEW1 [JSAM]
7955
7883
-
Val
TAC
[ENA]
¡û
>W1511360599
JSAN01000057
Chlamydiota
Candidatus Protochlamydia amoebophila amoebophila EI2 [JSAN]
10537
10465
-
Val
TAC
[ENA]
¡û
>W1610205947
FCNU01000011
Chlamydiota
Candidatus Protochlamydia phocaeensis C2 [FCNU]
9307
9382
+
Val
TAC
[ENA]
¡û
>W1710064148
BCPZ01000243
Chlamydiota
Candidatus Protochlamydia sp. W-9 [BCPZ]
9701
9629
-
Val
TAC
[ENA]
¡û
>W1710207293
FCNU01000011
Chlamydiota
Candidatus Protochlamydia phocaeensis C2 [FCNU]
9307
9382
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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