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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlamydiae
Anticodon = TAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463595 (10 seq.)
>W1711502015
MKSG01000002
Chlamydiota
Chlamydia sp. 32-24 [MKSG]
131991
132063
+
Val
TAC
[ENA]
¡û
>WENV180027174
FTIX01000122
[FTIX] metagenome; soil
11252
11324
+
Val
TAC
[ENA]
¢þ
>WENV180035583
FTLA01034960
[FTLA] metagenome; soil
73
1
-
Val
TAC
[ENA]
¢þ
>WENV181167799
OEIU01077921
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
499
427
-
Val
TAC
[ENA]
¢þ
>W141229855
BASK01001309
Chlamydiota
Neochlamydia sp. S13 [BASK]
30992
31064
+
Val
TAC
[ENA]
¡û
>W141273158
CCSC01000001
Chlamydiota
Candidatus Rubidus massiliensis 'Rubis' [CCSC]
1942766
1942838
+
Val
TAC
[ENA]
¡û
>PL191000003
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
145411
145339
-
Val
TAC
[ENA]
¡û
>WENV040706
AACY022102558
Marine microbial communities from Global Ocean Sampling (GOS)
322
247
-
Val
TAC
[ENA]
>W1511358786
JRXI01000058
Chlamydiota
Neochlamydia sp. TUME1 [JRXI]
2666
2738
+
Val
TAC
[ENA]
¡û
>W1511364953
JSDQ01000089
Chlamydiota
Neochlamydia sp. EPS4 [JSDQ]
19390
19318
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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