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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlamydiae
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182096 (4 seq.)
>W141229849
BASK01001261
Chlamydiae
Neochlamydia sp. S13 [BASK]
7754
7837
+
Tyr
GTA
[ENA]
¡û
>PL191000006
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
136478
136395
-
Tyr
GTA
[ENA]
¡û
>W1511358789
JRXI01000058
Chlamydiae
Neochlamydia sp. TUME1 [JRXI]
9735
9818
+
Tyr
GTA
[ENA]
¡û
>W1511364956
JSDQ01000089
Chlamydiae
Neochlamydia sp. EPS4 [JSDQ]
12331
12248
-
Tyr
GTA
[ENA]
¡û
Identical group No.281927 (11 seq.)
>W1711408027
MGLO01000010
Chlamydiae
Chlamydiae bacterium GWA2_50_15 (MGLO)
32847
32921
+
His
GTG
[ENA]
¡û
>W1711408078
MGLP01000034
Chlamydiae
Chlamydiae bacterium GWC2_50_10 (MGLP)
9073
9147
+
His
GTG
[ENA]
¡û
>W1711408097
MGLQ01000058
Chlamydiae
Chlamydiae bacterium GWF2_49_8 (MGLQ)
9111
9185
+
His
GTG
[ENA]
¡û
>W141229854
BASK01001308
Chlamydiae
Neochlamydia sp. S13 [BASK]
53028
53102
+
His
GTG
[ENA]
¡û
>PL191000002
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
100382
100456
+
His
GTG
[ENA]
¡û
>W1910725375
MGLT01000016
Chlamydiae
Chlamydiae bacterium RIFCSPHIGHO2_02_FULL_49_29 (MGLT)
43688
43614
-
His
GTG
[ENA]
¡û
>W1910725503
MGLX01000029
Chlamydiae
Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_32 (MGLX)
43781
43707
-
His
GTG
[ENA]
¡û
>W1910725651
MGMC01000025
Chlamydiae
Chlamydiae bacterium RIFCSPLOWO2_02_FULL_49_12 (MGMC)
44752
44678
-
His
GTG
[ENA]
¡û
>W1910725728
MGME01000021
Chlamydiae
Chlamydiae bacterium RIFCSPLOWO2_12_FULL_49_12 (MGME)
9074
9148
+
His
GTG
[ENA]
¡û
>W1511358790
JRXI01000061
Chlamydiae
Neochlamydia sp. TUME1 [JRXI]
23355
23281
-
His
GTG
[ENA]
¡û
>W1511364952
JSDQ01000086
Chlamydiae
Neochlamydia sp. EPS4 [JSDQ]
14204
14278
+
His
GTG
[ENA]
¡û
Identical group No.281928 (8 seq.)
>C017961
BX908798
Chlamydiae
Candidatus Protochlamydia amoebophila UWE25
958105
958032
-
Asp
GTC
[Ensembl]
¡û
>W141229856
BASK01001309
Chlamydiae
Neochlamydia sp. S13 [BASK]
31075
31150
+
Asp
GTC
[ENA]
¡û
>W141229888
BASL01000690
Chlamydiae
Candidatus Protochlamydia sp. R18 [BASL]
14208
14133
-
Asp
GTC
[ENA]
¡û
>PL191000004
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
145328
145253
-
Asp
GTC
[ENA]
¡û
>W1511358787
JRXI01000058
Chlamydiae
Neochlamydia sp. TUME1 [JRXI]
2749
2824
+
Asp
GTC
[ENA]
¡û
>W1511360600
JSAN01000057
Chlamydiae
Candidatus Protochlamydia amoebophila EI2 [JSAN]
10453
10378
-
Asp
GTC
[ENA]
¡û
>W1511364954
JSDQ01000089
Chlamydiae
Neochlamydia sp. EPS4 [JSDQ]
19307
19232
-
Asp
GTC
[ENA]
¡û
>W1710064149
BCPZ01000243
Chlamydiae
Candidatus Protochlamydia sp. W-9 (BCPZ)
9617
9542
-
Asp
GTC
[ENA]
¡û
Identical group No.463594 (5 seq.)
>W1711502178
MKSK01000006
Chlamydiae
Chlamydiales bacterium 38-26 (MKSK)
239679
239607
-
Thr
TGT
[ENA]
¡û
>W141229848
BASK01001261
Chlamydiae
Neochlamydia sp. S13 [BASK]
7675
7747
+
Thr
TGT
[ENA]
¡û
>PL191000005
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
136557
136485
-
Thr
TGT
[ENA]
¡û
>W1511358788
JRXI01000058
Chlamydiae
Neochlamydia sp. TUME1 [JRXI]
9656
9728
+
Thr
TGT
[ENA]
¡û
>W1511364955
JSDQ01000089
Chlamydiae
Neochlamydia sp. EPS4 [JSDQ]
12410
12338
-
Thr
TGT
[ENA]
¡û
Identical group No.739682 (1 seq.)
>PL171001858
LN879503
Chlamydiae
Protochlamydia naegleriophila KNic plasmid:pPNK
104626
104699
+
Thr
TGT
[ENA]
¡û
Identical group No.782285 (5 seq.)
>W1711502173
MKSK01000006
Chlamydiae
Chlamydiales bacterium 38-26 (MKSK)
141037
141111
+
Cys
GCA
[ENA]
¡û
>W141229853
BASK01001308
Chlamydiae
Neochlamydia sp. S13 [BASK]
10401
10473
+
Cys
GCA
[ENA]
¡û
>PL191000001
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
57755
57827
+
Cys
GCA
[ENA]
¡û
>W1511358791
JRXI01000065
Chlamydiae
Neochlamydia sp. TUME1 [JRXI]
2680
2608
-
Cys
GCA
[ENA]
¡û
>W1511364951
JSDQ01000083
Chlamydiae
Neochlamydia sp. EPS4 [JSDQ]
11646
11718
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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