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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chlamydiae
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182096 (4 seq.)
>W141229849
BASK01001261
Chlamydiota
Neochlamydia sp. S13 [BASK]
7754
7837
+
Tyr
GTA
[ENA]
¡û
>PL191000006
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
136478
136395
-
Tyr
GTA
[ENA]
¡û
>W1511358789
JRXI01000058
Chlamydiota
Neochlamydia sp. TUME1 [JRXI]
9735
9818
+
Tyr
GTA
[ENA]
¡û
>W1511364956
JSDQ01000089
Chlamydiota
Neochlamydia sp. EPS4 [JSDQ]
12331
12248
-
Tyr
GTA
[ENA]
¡û
Identical group No.281927 (11 seq.)
>W1711408027
MGLO01000010
Chlamydiota
Chlamydiae bacterium GWA2_50_15 [MGLO]
32847
32921
+
His
GTG
[ENA]
¡û
>W1711408078
MGLP01000034
Chlamydiota
Chlamydiae bacterium GWC2_50_10 [MGLP]
9073
9147
+
His
GTG
[ENA]
¡û
>W1711408097
MGLQ01000058
Chlamydiota
Chlamydiae bacterium GWF2_49_8 [MGLQ]
9111
9185
+
His
GTG
[ENA]
¡û
>W141229854
BASK01001308
Chlamydiota
Neochlamydia sp. S13 [BASK]
53028
53102
+
His
GTG
[ENA]
¡û
>PL191000002
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
100382
100456
+
His
GTG
[ENA]
¡û
>W1910725375
MGLT01000016
Chlamydiota
Chlamydiae bacterium RIFCSPHIGHO2_02_FULL_49_29 [MGLT]
43688
43614
-
His
GTG
[ENA]
¡û
>W1910725503
MGLX01000029
Chlamydiota
Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_32 [MGLX]
43781
43707
-
His
GTG
[ENA]
¡û
>W1910725651
MGMC01000025
Chlamydiota
Chlamydiae bacterium RIFCSPLOWO2_02_FULL_49_12 [MGMC]
44752
44678
-
His
GTG
[ENA]
¡û
>W1910725728
MGME01000021
Chlamydiota
Chlamydiae bacterium RIFCSPLOWO2_12_FULL_49_12 [MGME]
9074
9148
+
His
GTG
[ENA]
¡û
>W1511358790
JRXI01000061
Chlamydiota
Neochlamydia sp. TUME1 [JRXI]
23355
23281
-
His
GTG
[ENA]
¡û
>W1511364952
JSDQ01000086
Chlamydiota
Neochlamydia sp. EPS4 [JSDQ]
14204
14278
+
His
GTG
[ENA]
¡û
Identical group No.281928 (8 seq.)
>C017961
BX908798
Chlamydiota
Candidatus Protochlamydia amoebophila UWE25 [BX908798]
958105
958032
-
Asp
GTC
[Ensembl]
¡û
>W141229856
BASK01001309
Chlamydiota
Neochlamydia sp. S13 [BASK]
31075
31150
+
Asp
GTC
[ENA]
¡û
>W141229888
BASL01000690
Chlamydiota
Candidatus Protochlamydia sp. R18 [BASL]
14208
14133
-
Asp
GTC
[ENA]
¡û
>PL191000004
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
145328
145253
-
Asp
GTC
[ENA]
¡û
>W1511358787
JRXI01000058
Chlamydiota
Neochlamydia sp. TUME1 [JRXI]
2749
2824
+
Asp
GTC
[ENA]
¡û
>W1511360600
JSAN01000057
Chlamydiota
Candidatus Protochlamydia amoebophila amoebophila EI2 [JSAN]
10453
10378
-
Asp
GTC
[ENA]
¡û
>W1511364954
JSDQ01000089
Chlamydiota
Neochlamydia sp. EPS4 [JSDQ]
19307
19232
-
Asp
GTC
[ENA]
¡û
>W1710064149
BCPZ01000243
Chlamydiota
Candidatus Protochlamydia sp. W-9 [BCPZ]
9617
9542
-
Asp
GTC
[ENA]
¡û
Identical group No.463594 (5 seq.)
>W1711502178
MKSK01000006
Chlamydiota
Chlamydiales bacterium 38-26 [MKSK]
239679
239607
-
Thr
TGT
[ENA]
¡û
>W141229848
BASK01001261
Chlamydiota
Neochlamydia sp. S13 [BASK]
7675
7747
+
Thr
TGT
[ENA]
¡û
>PL191000005
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
136557
136485
-
Thr
TGT
[ENA]
¡û
>W1511358788
JRXI01000058
Chlamydiota
Neochlamydia sp. TUME1 [JRXI]
9656
9728
+
Thr
TGT
[ENA]
¡û
>W1511364955
JSDQ01000089
Chlamydiota
Neochlamydia sp. EPS4 [JSDQ]
12410
12338
-
Thr
TGT
[ENA]
¡û
Identical group No.463595 (10 seq.)
>W1711502015
MKSG01000002
Chlamydiota
Chlamydia sp. 32-24 [MKSG]
131991
132063
+
Val
TAC
[ENA]
¡û
>WENV180027174
FTIX01000122
[FTIX] metagenome; soil
11252
11324
+
Val
TAC
[ENA]
¢þ
>WENV180035583
FTLA01034960
[FTLA] metagenome; soil
73
1
-
Val
TAC
[ENA]
¢þ
>WENV181167799
OEIU01077921
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
499
427
-
Val
TAC
[ENA]
¢þ
>W141229855
BASK01001309
Chlamydiota
Neochlamydia sp. S13 [BASK]
30992
31064
+
Val
TAC
[ENA]
¡û
>W141273158
CCSC01000001
Chlamydiota
Candidatus Rubidus massiliensis 'Rubis' [CCSC]
1942766
1942838
+
Val
TAC
[ENA]
¡û
>PL191000003
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
145411
145339
-
Val
TAC
[ENA]
¡û
>WENV040706
AACY022102558
Marine microbial communities from Global Ocean Sampling (GOS)
322
247
-
Val
TAC
[ENA]
>W1511358786
JRXI01000058
Chlamydiota
Neochlamydia sp. TUME1 [JRXI]
2666
2738
+
Val
TAC
[ENA]
¡û
>W1511364953
JSDQ01000089
Chlamydiota
Neochlamydia sp. EPS4 [JSDQ]
19390
19318
-
Val
TAC
[ENA]
¡û
Identical group No.739682 (1 seq.)
>PL171001858
LN879503
Chlamydiae
Protochlamydia naegleriophila KNic plasmid:pPNK
104626
104699
+
Thr
TGT
[ENA]
¡û
Identical group No.782285 (5 seq.)
>W1711502173
MKSK01000006
Chlamydiota
Chlamydiales bacterium 38-26 [MKSK]
141037
141111
+
Cys
GCA
[ENA]
¡û
>W141229853
BASK01001308
Chlamydiota
Neochlamydia sp. S13 [BASK]
10401
10473
+
Cys
GCA
[ENA]
¡û
>PL191000001
AP017978
Chlamydiae
Neochlamydia sp. S13 plasmid:pS13 (AP017978)
57755
57827
+
Cys
GCA
[ENA]
¡û
>W1511358791
JRXI01000065
Chlamydiota
Neochlamydia sp. TUME1 [JRXI]
2680
2608
-
Cys
GCA
[ENA]
¡û
>W1511364951
JSDQ01000083
Chlamydiota
Neochlamydia sp. EPS4 [JSDQ]
11646
11718
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK