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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = AAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.328655 (3 seq.)
>WENV183723845
PEAW01024378
[PEAW] mollusc metagenome; combination of 3 Haliotis diversicolor samples: VC2003, Pt131, and Pt118; samples were filtered
176
104
-
Val
AAC
[ENA]
¢þ
>SRA1014287
SRR023845.71329
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
137
62
-
Val
AAC
[SRA]
>SRA1014594
SRR023845.215281
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
80
5
-
Val
AAC
[SRA]
Identical group No.328675 (2 seq.)
>SRA1014983
SRR023845.409596
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
168
240
+
Val
AAC
[SRA]
>SRA1015674
SRR023846.153554
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
50
123
+
Val
AAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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