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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = AAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525549 (10 seq.)
>WENV183723843
PEAW01023814
[PEAW] mollusc metagenome; combination of 3 Haliotis diversicolor samples: VC2003, Pt131, and Pt118; samples were filtered
243
315
+
Ile
AAT
[ENA]
¢þ
>SRA1014120
SRR023845.8818
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
81
9
-
Ile
AAT
[SRA]
>SRA1014188
SRR023845.32560
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
104
176
+
Ile
AAT
[SRA]
>SRA1014210
SRR023845.40615
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
104
176
+
Ile
AAT
[SRA]
>SRA1014406
SRR023845.123849
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
90
162
+
Ile
AAT
[SRA]
>SRA1015154
SRR023845.479783
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
108
180
+
Ile
AAT
[SRA]
>SRA1015424
SRR023846.51781
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
239
167
-
Ile
AAT
[SRA]
>SRA1015472
SRR023846.76466
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
101
173
+
Ile
AAT
[SRA]
>SRA1016514
SRR023846.539355
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
38
110
+
Ile
AAT
[SRA]
>SRA1016543
SRR023846.552711
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
232
160
-
Ile
AAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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