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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = ACG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236652 (1 seq.)
>SRA1014580
SRR023845.209227
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
164
88
-
Arg
ACG
[SRA]
Identical group No.250646 (1 seq.)
>SRA1014701
SRR023845.270800
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
51
128
+
Arg
ACG
[SRA]
Identical group No.250647 (1 seq.)
>SRA1015182
SRR023845.490635
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
189
112
-
Arg
ACG
[SRA]
Identical group No.266342 (1 seq.)
>SRA1016320
SRR023846.447134
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
89
166
+
Arg
ACG
[SRA]
Identical group No.266343 (1 seq.)
>SRA1016425
SRR023846.491043
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
91
14
-
Arg
ACG
[SRA]
Identical group No.337624 (1 seq.)
>SRA1014709
SRR023845.274457
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
73
-1
-
Arg
ACG
[SRA]
Identical group No.337639 (1 seq.)
>SRA1015108
SRR023845.463803
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
73
-1
-
Arg
ACG
[SRA]
Identical group No.697300 (1 seq.)
>SRA1014585
SRR023845.212295
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
31
102
+
Arg
ACG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK