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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = AGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.213183 (1 seq.)
>SRA1016386
SRR023846.473961
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
7
88
+
Ser
AGA
[SRA]
Identical group No.227211 (2 seq.)
>SRA1016316
SRR023846.446385
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
91
11
-
Ser
AGA
[SRA]
>SRA1016529
SRR023846.544817
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
91
11
-
Ser
AGA
[SRA]
Identical group No.232043 (1 seq.)
>SRA1015612
SRR023846.132397
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
219
138
-
Ser
AGA
[SRA]
Identical group No.232045 (1 seq.)
>SRA1016229
SRR023846.409525
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
192
111
-
Ser
AGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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