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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = AGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.429732 (8 seq.)
>WENV181372383
OFQW01055559
[OFQW] wastewater metagenome; Exp Tend NO 90WW
441
514
+
Thr
AGT
[ENA]
¢þ
>WENV183723829
PEAW01016972
[PEAW] mollusc metagenome; combination of 3 Haliotis diversicolor samples: VC2003, Pt131, and Pt118; samples were filtered
93
164
+
Thr
AGT
[ENA]
¢þ
>SRA1014596
SRR023845.216876
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
81
10
-
Thr
AGT
[SRA]
>SRA1014654
SRR023845.244719
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
143
214
+
Thr
AGT
[SRA]
>SRA1015089
SRR023845.457120
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
140
211
+
Thr
AGT
[SRA]
>SRA1015538
SRR023846.103223
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
198
127
-
Thr
AGT
[SRA]
>SRA1016274
SRR023846.431404
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
38
109
+
Thr
AGT
[SRA]
>SRA1016338
SRR023846.457848
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
143
72
-
Thr
AGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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