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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = CAC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.337613 (1 seq.)
>SRA1014457
SRR023845.149036
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
199
272
+
Val
CAC
[SRA]
Identical group No.697291 (3 seq.)
>SRA1014368
SRR023845.108634
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
21
95
+
Val
CAC
[SRA]
>SRA1014606
SRR023845.223646
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
164
238
+
Val
CAC
[SRA]
>SRA1015186
SRR023845.491713
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
148
222
+
Val
CAC
[SRA]
Identical group No.697292 (1 seq.)
>SRA1014413
SRR023845.127366
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
185
259
+
Val
CAC
[SRA]
Identical group No.697313 (1 seq.)
>SRA1014780
SRR023845.312478
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
158
232
+
Val
CAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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