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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = CAG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148190 (1 seq.)
>SRA1015870
SRR023846.235702
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
61
147
+
Leu
CAG
[SRA]
Identical group No.162716 (1 seq.)
>SRA1014735
SRR023845.288689
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
70
154
+
Leu
CAG
[SRA]
Identical group No.162722 (1 seq.)
>SRA1014647
SRR023845.239796
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
138
54
-
Leu
CAG
[SRA]
Identical group No.193734 (4 seq.)
>SRA1014476
SRR023845.156906
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
117
200
+
Leu
CAG
[SRA]
>SRA1014842
SRR023845.339582
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
94
177
+
Leu
CAG
[SRA]
>SRA1015327
SRR023846.20069
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
76
159
+
Leu
CAG
[SRA]
>SRA1015582
SRR023846.118871
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
213
130
-
Leu
CAG
[SRA]
Identical group No.193739 (1 seq.)
>SRA1014912
SRR023845.378140
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
140
57
-
Leu
CAG
[SRA]
Identical group No.213172 (1 seq.)
>SRA1015309
SRR023846.11977
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
80
163
+
Leu
CAG
[SRA]
Identical group No.213173 (1 seq.)
>SRA1015339
SRR023846.24075
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
7
91
+
Leu
CAG
[SRA]
Identical group No.213180 (1 seq.)
>SRA1016138
SRR023846.363216
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
104
188
+
Leu
CAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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