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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = CGG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236653 (1 seq.)
>SRA1014731
SRR023845.286775
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
64
142
+
Pro
CGG
[SRA]
Identical group No.337615 (1 seq.)
>SRA1014469
SRR023845.153337
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
110
34
-
Pro
CGG
[SRA]
Identical group No.337634 (1 seq.)
>SRA1014966
SRR023845.400879
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
155
231
+
Pro
CGG
[SRA]
Identical group No.429129 (1 seq.)
>SRA1016430
SRR023846.493481
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
96
171
+
Pro
CGG
[SRA]
Identical group No.525588 (1 seq.)
>SRA1014996
SRR023845.416978
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
150
225
+
Pro
CGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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