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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = CGT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525592 (1 seq.)
>SRA1015211
SRR023845.500374
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
157
234
+
Thr
CGT
[SRA]
Identical group No.628144 (2 seq.)
>SRA1015463
SRR023846.69942
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
14
88
+
Thr
CGT
[SRA]
>SRA1015571
SRR023846.115344
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
14
88
+
Thr
CGT
[SRA]
Identical group No.628149 (2 seq.)
>SRA1015510
SRR023846.89828
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
51
124
+
Thr
CGT
[SRA]
>SRA1016462
SRR023846.511205
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
26
99
+
Thr
CGT
[SRA]
Identical group No.697296 (1 seq.)
>SRA1014477
SRR023845.156980
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
163
237
+
Thr
CGT
[SRA]
Identical group No.697306 (1 seq.)
>SRA1014720
SRR023845.282359
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
7
81
+
Thr
CGT
[SRA]
Identical group No.697318 (2 seq.)
>SRA1015059
SRR023845.444235
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
112
184
+
Thr
CGT
[SRA]
>SRA1015993
SRR023846.298210
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
230
158
-
Thr
CGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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