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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = CTT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525562 (1 seq.)
>SRA1014391
SRR023845.117339
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
48
123
+
Lys
CTT
[SRA]
Identical group No.525567 (10 seq.)
>SRA1014535
SRR023845.188431
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
141
67
-
Lys
CTT
[SRA]
>SRA1015317
SRR023846.14531
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
134
208
+
Lys
CTT
[SRA]
>SRA1015408
SRR023846.48365
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
82
156
+
Lys
CTT
[SRA]
>SRA1015524
SRR023846.96154
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
122
48
-
Lys
CTT
[SRA]
>SRA1015567
SRR023846.114411
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
134
208
+
Lys
CTT
[SRA]
>SRA1015793
SRR023846.202441
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
131
205
+
Lys
CTT
[SRA]
>SRA1015833
SRR023846.218230
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
176
102
-
Lys
CTT
[SRA]
>SRA1016162
SRR023846.375642
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
74
-1
-
Lys
CTT
[SRA]
>SRA1016310
SRR023846.444263
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
162
88
-
Lys
CTT
[SRA]
>SRA1016475
SRR023846.518677
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
86
12
-
Lys
CTT
[SRA]
Identical group No.525572 (1 seq.)
>SRA1014595
SRR023845.216358
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
25
100
+
Lys
CTT
[SRA]
Identical group No.525578 (2 seq.)
>SRA1014775
SRR023845.309319
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
22
95
+
Lys
CTT
[SRA]
>SRA1016089
SRR023846.343207
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
215
142
-
Lys
CTT
[SRA]
Identical group No.525579 (1 seq.)
>SRA1014827
SRR023845.332730
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
193
120
-
Lys
CTT
[SRA]
Identical group No.628146 (1 seq.)
>SRA1015485
SRR023846.80387
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
118
192
+
Lys
CTT
[SRA]
Identical group No.628155 (1 seq.)
>SRA1015605
SRR023846.130403
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
74
148
+
Lys
CTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK