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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = GAC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.337619 (1 seq.)
>SRA1014602
SRR023845.220667
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
69
145
+
Val
GAC
[SRA]
Identical group No.429125 (2 seq.)
>SRA1016035
SRR023846.318019
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
83
157
+
Val
GAC
[SRA]
>SRA1016370
SRR023846.469303
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
196
270
+
Val
GAC
[SRA]
Identical group No.628164 (1 seq.)
>SRA1015943
SRR023846.275411
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
37
112
+
Val
GAC
[SRA]
Identical group No.697286 (1 seq.)
>SRA1014184
SRR023845.31703
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
134
60
-
Val
GAC
[SRA]
Identical group No.761295 (1 seq.)
>SRA1015581
SRR023846.118154
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
120
194
+
Val
GAC
[SRA]
Identical group No.761305 (1 seq.)
>SRA1016302
SRR023846.440733
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
120
192
+
Val
GAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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