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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = GCC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.628174 (1 seq.)
>SRA1016364
SRR023846.466892
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
154
79
-
Gly
GCC
[SRA]
Identical group No.628175 (1 seq.)
>SRA1016401
SRR023846.480568
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
18
93
+
Gly
GCC
[SRA]
Identical group No.628176 (1 seq.)
>SRA1016460
SRR023846.508799
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
118
190
+
Gly
GCC
[SRA]
Identical group No.697317 (1 seq.)
>SRA1015018
SRR023845.424550
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
215
144
-
Gly
GCC
[SRA]
Identical group No.799243 (1 seq.)
>SRA1014126
SRR023845.9514
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
226
153
-
Gly
GCC
[SRA]
Identical group No.828355 (1 seq.)
>SRA1015806
SRR023846.207499
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
41
111
+
Gly
GCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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