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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = GCT
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9558 (1 seq.)
>SRA1014437
SRR023845.143406
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
52
145
+
Ser
GCT
[SRA]
Identical group No.18822 (1 seq.)
>SRA1015337
SRR023846.22775
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
149
241
+
Ser
GCT
[SRA]
Identical group No.43817 (1 seq.)
>SRA1016231
SRR023846.410173
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
173
83
-
Ser
GCT
[SRA]
Identical group No.55030 (5 seq.)
>SRA1014396
SRR023845.120176
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
73
162
+
Ser
GCT
[SRA]
>SRA1014873
SRR023845.355142
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
175
264
+
Ser
GCT
[SRA]
>SRA1014887
SRR023845.364466
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
114
203
+
Ser
GCT
[SRA]
>SRA1015138
SRR023845.474520
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
53
142
+
Ser
GCT
[SRA]
>SRA1016077
SRR023846.338971
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
207
118
-
Ser
GCT
[SRA]
Identical group No.55035 (1 seq.)
>SRA1015087
SRR023845.456400
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
143
54
-
Ser
GCT
[SRA]
Identical group No.85064 (1 seq.)
>SRA1016556
SRR023846.564879
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
210
122
-
Ser
GCT
[SRA]
Identical group No.227209 (2 seq.)
>SRA1015853
SRR023846.229089
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
52
134
+
Ser
GCT
[SRA]
>SRA1016204
SRR023846.401391
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
9
91
+
Ser
GCT
[SRA]
Identical group No.250644 (1 seq.)
>SRA1014241
SRR023845.51745
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
228
152
-
Ser
GCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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