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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = GTA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.126835 (1 seq.)
>SRA1014122
SRR023845.9034
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
80
164
+
Tyr
GTA
[SRA]
Identical group No.148191 (1 seq.)
>SRA1016046
SRR023846.323443
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
118
35
-
Tyr
GTA
[SRA]
Identical group No.162714 (1 seq.)
>SRA1014538
SRR023845.189371
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
190
107
-
Tyr
GTA
[SRA]
Identical group No.162719 (1 seq.)
>SRA1015197
SRR023845.495991
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
35
120
+
Tyr
GTA
[SRA]
Identical group No.162724 (1 seq.)
>SRA1015079
SRR023845.452433
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
69
153
+
Tyr
GTA
[SRA]
Identical group No.213181 (1 seq.)
>SRA1016212
SRR023846.405038
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
111
27
-
Tyr
GTA
[SRA]
Identical group No.227208 (1 seq.)
>SRA1015817
SRR023846.211078
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
112
31
-
Tyr
GTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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