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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = GTT
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.230044 (2 seq.)
>SRA1014543
SRR023845.192077
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
256
177
-
Asn
GTT
[SRA]
>SRA1016038
SRR023846.319840
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
63
142
+
Asn
GTT
[SRA]
Identical group No.337610 (1 seq.)
>SRA1014379
SRR023845.114016
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
131
58
-
Asn
GTT
[SRA]
Identical group No.429120 (1 seq.)
>SRA1015688
SRR023846.158853
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
2
76
+
Asn
GTT
[SRA]
Identical group No.525555 (1 seq.)
>SRA1014240
SRR023845.50503
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
182
108
-
Asn
GTT
[SRA]
Identical group No.525576 (1 seq.)
>SRA1014700
SRR023845.270101
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
221
146
-
Asn
GTT
[SRA]
Identical group No.525580 (1 seq.)
>SRA1014829
SRR023845.333321
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
134
60
-
Asn
GTT
[SRA]
Identical group No.697309 (1 seq.)
>SRA1014745
SRR023845.295600
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
101
175
+
Asn
GTT
[SRA]
Identical group No.761299 (1 seq.)
>SRA1015829
SRR023846.216642
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
82
155
+
Asn
GTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK