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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = TCA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.937 (5 seq.)
>C181177169
CP029343
Betaproteobacteria
Massilia oculi CCUG 43427 [CP029343]
161352
161256
-
SeC
TCA
-
¡û
>W1910576115
JSAB01000053
Betaproteobacteria
Massilia aurea CFS-1 [JSAB]
21749
21845
+
Sec
TCA
[ENA]
¡û
>W1810673306
QJTZ01000037
Gammaproteobacteria
Pseudomonas syringae pv. pisi 1452A [QJTZ]
26259
26163
-
Sec
TCA
[ENA]
¡û
>SRA1014531
SRR023845.186472
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
49
145
+
SeC
TCA
[SRA]
>SRA1016093
SRR023846.345785
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
76
172
+
SeC
TCA
[SRA]
Identical group No.4147 (1 seq.)
>SRA1014362
SRR023845.104501
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
215
120
-
SeC
TCA
[SRA]
Identical group No.628141 (1 seq.)
>SRA1015381
SRR023846.37846
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
261
190
-
SeC
TCA
[SRA]
Identical group No.697320 (1 seq.)
>SRA1015127
SRR023845.469943
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
170
99
-
SeC
TCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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