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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = TGA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23483 (1 seq.)
>SRA1015261
SRR023845.525701
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
128
37
-
Ser
TGA
[SRA]
Identical group No.36036 (1 seq.)
>SRA1015208
SRR023845.499382
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
125
215
+
Ser
TGA
[SRA]
Identical group No.43816 (1 seq.)
>SRA1015947
SRR023846.278402
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
191
281
+
Ser
TGA
[SRA]
Identical group No.55027 (2 seq.)
>SRA1014298
SRR023845.79410
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
21
110
+
Ser
TGA
[SRA]
>SRA1014943
SRR023845.392599
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
241
152
-
Ser
TGA
[SRA]
Identical group No.55028 (1 seq.)
>SRA1014304
SRR023845.82749
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
158
247
+
Ser
TGA
[SRA]
Identical group No.68829 (1 seq.)
>SRA1016075
SRR023846.338377
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
202
113
-
Ser
TGA
[SRA]
Identical group No.108911 (1 seq.)
>SRA1015596
SRR023846.127230
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
298
211
-
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK