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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = TGG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250645 (1 seq.)
>SRA1014495
SRR023845.164420
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
215
138
-
Pro
TGG
[SRA]
Identical group No.429127 (1 seq.)
>SRA1016303
SRR023846.441934
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
165
238
+
Pro
TGG
[SRA]
Identical group No.429133 (1 seq.)
>SRA1016341
SRR023846.458989
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
39
112
+
Pro
TGG
[SRA]
Identical group No.628145 (2 seq.)
>SRA1015469
SRR023846.72432
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
60
135
+
Pro
TGG
[SRA]
>SRA1016201
SRR023846.397261
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
60
135
+
Pro
TGG
[SRA]
Identical group No.761308 (1 seq.)
>SRA1015434
SRR023846.55842
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
173
244
+
Pro
TGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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