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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = TTG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266337 (1 seq.)
>SRA1015518
SRR023846.93536
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
132
209
+
Gln
TTG
[SRA]
Identical group No.628162 (1 seq.)
>SRA1015898
SRR023846.247922
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
175
100
-
Gln
TTG
[SRA]
Identical group No.628181 (4 seq.)
>SRA1016358
SRR023846.464220
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
34
106
+
Gln
TTG
[SRA]
>SRA1016452
SRR023846.504184
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
34
106
+
Gln
TTG
[SRA]
>SRA1016455
SRR023846.506014
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
34
106
+
Gln
TTG
[SRA]
>SRA1016549
SRR023846.558213
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
34
106
+
Gln
TTG
[SRA]
Identical group No.697283 (6 seq.)
>SRA1014148
SRR023845.19275
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
153
82
-
Gln
TTG
[SRA]
>SRA1014560
SRR023845.199413
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
100
29
-
Gln
TTG
[SRA]
>SRA1015816
SRR023846.210708
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
135
64
-
Gln
TTG
[SRA]
>SRA1015959
SRR023846.284901
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
120
191
+
Gln
TTG
[SRA]
>SRA1015989
SRR023846.295219
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
70
141
+
Gln
TTG
[SRA]
>SRA1016237
SRR023846.412812
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
97
26
-
Gln
TTG
[SRA]
Identical group No.697298 (1 seq.)
>SRA1014533
SRR023845.187457
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
132
206
+
Gln
TTG
[SRA]
Identical group No.761298 (1 seq.)
>SRA1015752
SRR023846.181608
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
55
128
+
Gln
TTG
[SRA]
Identical group No.761302 (1 seq.)
>SRA1015921
SRR023846.263730
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
212
141
-
Gln
TTG
[SRA]
Identical group No.761309 (1 seq.)
>SRA1015501
SRR023846.86649
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
60
131
+
Gln
TTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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