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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = TTT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525583 (1 seq.)
>SRA1014903
SRR023845.374708
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
76
148
+
Lys
TTT
[SRA]
Identical group No.525590 (1 seq.)
>SRA1015102
SRR023845.461514
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
130
202
+
Lys
TTT
[SRA]
Identical group No.628139 (2 seq.)
>SRA1015319
SRR023846.14875
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
40
112
+
Lys
TTT
[SRA]
>SRA1015389
SRR023846.40118
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
40
112
+
Lys
TTT
[SRA]
Identical group No.628142 (1 seq.)
>SRA1015447
SRR023846.62614
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
150
75
-
Lys
TTT
[SRA]
Identical group No.628147 (1 seq.)
>SRA1015486
SRR023846.80937
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
35
109
+
Lys
TTT
[SRA]
Identical group No.628152 (2 seq.)
>SRA1015575
SRR023846.116769
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
125
200
+
Lys
TTT
[SRA]
>SRA1016408
SRR023846.483665
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
125
199
+
Lys
TTT
[SRA]
Identical group No.628153 (1 seq.)
>SRA1015579
SRR023846.117604
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
164
89
-
Lys
TTT
[SRA]
Identical group No.628166 (1 seq.)
>SRA1016016
SRR023846.313241
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
198
270
+
Lys
TTT
[SRA]
Identical group No.628173 (1 seq.)
>SRA1016323
SRR023846.449888
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
76
1
-
Lys
TTT
[SRA]
Identical group No.761307 (1 seq.)
>SRA1016373
SRR023846.469855
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
57
128
+
Lys
TTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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