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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Compost metagenome contig00001
Anticodon = CAA
HIT:
27 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.110825 (1 seq.)
>ENV09003575
ADGO01094103
Compost metagenome contig00001
270
185
-
Leu
CAA
[ENA]
¡û
Identical group No.110827 (1 seq.)
>ENV09003637
ADGO01116474
Compost metagenome contig00001
398
483
+
Leu
CAA
[ENA]
¡û
Identical group No.130558 (4 seq.)
>W1711168556
LVYD01000078
Bacteroidota
Niastella vici [LVYD]
106
22
-
Leu
CAA
[ENA]
¡û
>W1711171985
LWBP01000220
Bacteroidota
Niastella populi [LWBP]
21907
21821
-
Leu
CAA
[ENA]
¡û
>WENV180037911
FVAA012001362
[FVAA] soil metagenome; Soil
116
32
-
Leu
CAA
[ENA]
¢þ
>ENV09003068
ADGO01003204
Compost metagenome contig00001
1212
1126
-
Leu
CAA
[ENA]
¡û
Identical group No.134895 (3 seq.)
>ENV09003360
ADGO01024303
Compost metagenome contig00001
1827
1741
-
Leu
CAA
[ENA]
¡û
>ENV09003465
ADGO01049976
Compost metagenome contig00001
95
9
-
Leu
CAA
[ENA]
¡û
>C161038378
CP011971
Gammaproteobacteria
Steroidobacter denitrificans DSM 18526 [CP011971]
1452308
1452394
+
Leu
CAA
[Ensembl]
¡û
Identical group No.151364 (1 seq.)
>ENV09003004
ADGO01001225
Compost metagenome contig00001
311
227
-
Leu
CAA
[ENA]
¡û
Identical group No.151365 (1 seq.)
>ENV09003018
ADGO01001647
Compost metagenome contig00001
267
183
-
Leu
CAA
[ENA]
¡û
Identical group No.151374 (1 seq.)
>ENV09003259
ADGO01014025
Compost metagenome contig00001
942
1028
+
Leu
CAA
[ENA]
¡û
Identical group No.151377 (1 seq.)
>ENV09003346
ADGO01022325
Compost metagenome contig00001
141
227
+
Leu
CAA
[ENA]
¡û
Identical group No.151380 (1 seq.)
>ENV09003444
ADGO01044645
Compost metagenome contig00001
137
54
-
Leu
CAA
[ENA]
¡û
Identical group No.151381 (1 seq.)
>ENV09003477
ADGO01060384
Compost metagenome contig00001
2
88
+
Leu
CAA
[ENA]
¡û
Identical group No.151389 (1 seq.)
>ENV09003788
ADGO01176307
Compost metagenome contig00001
48
134
+
Leu
CAA
[ENA]
¡û
Identical group No.151393 (1 seq.)
>ENV09003804
ADGO01181272
Compost metagenome contig00001
174
260
+
Leu
CAA
[ENA]
¡û
Identical group No.151394 (1 seq.)
>ENV09003844
ADGO01192304
Compost metagenome contig00001
434
348
-
Leu
CAA
[ENA]
¡û
Identical group No.178466 (1 seq.)
>ENV09003394
ADGO01030821
Compost metagenome contig00001
182
97
-
Leu
CAA
[ENA]
¡û
Identical group No.178476 (1 seq.)
>ENV09003883
ADGO01203006
Compost metagenome contig00001
50
135
+
Leu
CAA
[ENA]
¡û
Identical group No.186937 (4 seq.)
>WENV170329711
CESV01153564
[CESV] marine metagenome genome assembly TARA_100_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
281
197
-
Leu
CAA
[ENA]
¢þ
>WENV170524125
CEWG01398356
[CEWG] marine metagenome genome assembly TARA_102_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1
85
+
Leu
CAA
[ENA]
¢þ
>WENV170927346
MDTG01115724
[MDTG] marine metagenome; seawater
5730
5814
+
Leu
CAA
[ENA]
¢þ
>ENV09003112
ADGO01005408
Compost metagenome contig00001
833
917
+
Leu
CAA
[ENA]
¡û
Identical group No.215876 (1 seq.)
>ENV09002994
ADGO01000715
Compost metagenome contig00001
553
470
-
Leu
CAA
[ENA]
¡û
Identical group No.215879 (1 seq.)
>ENV09003091
ADGO01004394
Compost metagenome contig00001
1993
1909
-
Leu
CAA
[ENA]
¡û
Identical group No.215890 (1 seq.)
>ENV09003547
ADGO01083036
Compost metagenome contig00001
374
293
-
Leu
CAA
[ENA]
¡û
Identical group No.215894 (1 seq.)
>ENV09003887
ADGO01203325
Compost metagenome contig00001
100
181
+
Leu
CAA
[ENA]
¡û
Identical group No.227898 (1 seq.)
>ENV09003786
ADGO01174988
Compost metagenome contig00001
197
280
+
Leu
CAA
[ENA]
¡û
Identical group No.232227 (1 seq.)
>ENV09002968
ADGO01000473
Compost metagenome contig00001
160
241
+
Leu
CAA
[ENA]
¡û
Identical group No.240239 (1 seq.)
>ENV09003437
ADGO01042676
Compost metagenome contig00001
84
8
-
Leu
CAA
[ENA]
¡û
Identical group No.441337 (1 seq.)
>ENV09003184
ADGO01009451
Compost metagenome contig00001
1041
1117
+
Leu
CAA
[ENA]
¡û
Identical group No.441373 (1 seq.)
>ENV09003606
ADGO01102619
Compost metagenome contig00001
281
357
+
Leu
CAA
[ENA]
¡û
Identical group No.441421 (1 seq.)
>ENV09003923
ADGO01216850
Compost metagenome contig00001
164
90
-
Leu
CAA
[ENA]
¡û
Identical group No.641843 (1 seq.)
>ENV09003791
ADGO01177291
Compost metagenome contig00001
289
364
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK