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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Compost metagenome contig00001
Anticodon = CAG
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.71243 (1 seq.)
>ENV09003720
ADGO01153669
Compost metagenome contig00001
191
104
-
Leu
CAG
[ENA]
¡û
Identical group No.151366 (2 seq.)
>ENV09003107
ADGO01005203
Compost metagenome contig00001
1133
1219
+
Leu
CAG
[ENA]
¡û
>ENV09003770
ADGO01170017
Compost metagenome contig00001
381
297
-
Leu
CAG
[ENA]
¡û
Identical group No.151368 (1 seq.)
>ENV09003170
ADGO01008125
Compost metagenome contig00001
4272
4358
+
Leu
CAG
[ENA]
¡û
Identical group No.151370 (1 seq.)
>ENV09003211
ADGO01010962
Compost metagenome contig00001
393
479
+
Leu
CAG
[ENA]
¡û
Identical group No.151371 (1 seq.)
>ENV09003212
ADGO01011422
Compost metagenome contig00001
100
184
+
Leu
CAG
[ENA]
¡û
Identical group No.151379 (1 seq.)
>ENV09003418
ADGO01036749
Compost metagenome contig00001
325
242
-
Leu
CAG
[ENA]
¡û
Identical group No.151383 (1 seq.)
>ENV09003613
ADGO01105972
Compost metagenome contig00001
271
185
-
Leu
CAG
[ENA]
¡û
Identical group No.151387 (1 seq.)
>ENV09003695
ADGO01138941
Compost metagenome contig00001
196
110
-
Leu
CAG
[ENA]
¡û
Identical group No.151388 (1 seq.)
>ENV09003759
ADGO01168938
Compost metagenome contig00001
92
6
-
Leu
CAG
[ENA]
¡û
Identical group No.151391 (1 seq.)
>ENV09003796
ADGO01178520
Compost metagenome contig00001
193
279
+
Leu
CAG
[ENA]
¡û
Identical group No.151395 (1 seq.)
>ENV09003871
ADGO01200834
Compost metagenome contig00001
48
132
+
Leu
CAG
[ENA]
¡û
Identical group No.178472 (1 seq.)
>ENV09003714
ADGO01150230
Compost metagenome contig00001
83
166
+
Leu
CAG
[ENA]
¡û
Identical group No.188224 (9 seq.)
>WENV180694544
OCZS012407389
[OCZS] soil metagenome; soil
152
70
-
Leu
CAG
[ENA]
¢þ
>C191153682
CP037755
Bacteroidota
Pseudocnuella soli 17J28-1 [CP037755]
2715586
2715504
-
Leu
CAG
-
¡û
>W1810745591
QOWJ01000001
Bacteroidota
Paracnuella aquatica N24 [QOWJ]
926421
926503
+
Leu
CAG
[ENA]
¡û
>ENV09003416
ADGO01035869
Compost metagenome contig00001
83
1
-
Leu
CAG
[ENA]
¡û
>W1510019455
BBWV01000002
Bacteroidota
Flavihumibacter petaseus NBRC 106054 [BBWV]
493676
493760
+
Leu
CAG
[ENA]
¡û
>W1511300696
JPHF01000002
Bacteroidota
Flavihumibacter sp. ZG627 [JPHF]
136082
136166
+
Leu
CAG
[ENA]
¡û
>W1511387788
JSVC01000050
Bacteroidota
Flavihumibacter solisilvae 3·î3Æü [JSVC]
1999
2083
+
Leu
CAG
[ENA]
¡û
>C161034882
CP011390
Bacteroidota
Flavisolibacter tropicus LCS9 [CP011390]
5659617
5659535
-
Leu
CAG
[Ensembl]
¡û
>W1610935531
LUKG01000062
Bacteroidota
Flavihumibacter sp. CACIAM 22H1 [LUKG]
617
535
-
Leu
CAG
[ENA]
¡û
Identical group No.215886 (2 seq.)
>ENV09003412
ADGO01033255
Compost metagenome contig00001
3536
3452
-
Leu
CAG
[ENA]
¡û
>ENV09003787
ADGO01175831
Compost metagenome contig00001
169
85
-
Leu
CAG
[ENA]
¡û
Identical group No.441339 (1 seq.)
>ENV09003202
ADGO01009921
Compost metagenome contig00001
101
27
-
Leu
CAG
[ENA]
¡û
Identical group No.441365 (1 seq.)
>ENV09003524
ADGO01079019
Compost metagenome contig00001
140
216
+
Leu
CAG
[ENA]
¡û
Identical group No.441396 (1 seq.)
>ENV09003766
ADGO01169536
Compost metagenome contig00001
321
394
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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