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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Compost metagenome contig00001
Anticodon = CCT
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309931 (5 seq.)
>WENV180690488
OCZS010008310
[OCZS] soil metagenome; soil
3465
3391
-
Arg
CCT
[ENA]
¢þ
>WENV180691771
OCZS010209264
[OCZS] soil metagenome; soil
608
534
-
Arg
CCT
[ENA]
¢þ
>WENV181123060
OEFO01067479
[OEFO] soil metagenome; soil
81
155
+
Arg
CCT
[ENA]
¢þ
>WENV181162222
OEIN01005173
[OEIN] soil metagenome; soil
169
95
-
Arg
CCT
[ENA]
¢þ
>ENV09003761
ADGO01169083
Compost metagenome contig00001
117
44
-
Arg
CCT
[ENA]
¡û
Identical group No.345269 (6 seq.)
>WENV181162714
OEIO01008410
[OEIO] marine metagenome; sea ice
293
217
-
Arg
CCT
[ENA]
¢þ
>WENV183627425
OOGL01003762
[OOGL] marine metagenome; sea ice
579
655
+
Arg
CCT
[ENA]
¢þ
>WENV183630774
OOGU01001964
[OOGU] marine metagenome; sea ice
1866
1790
-
Arg
CCT
[ENA]
¢þ
>W141562702
JHZK01000001
Alphaproteobacteria
Afifella pfennigii DSM 17143 [JHZK]
225200
225124
-
Arg
CCT
[ENA]
¡û
>W1911765981
QXDF01000001
Alphaproteobacteria
Dichotomicrobium thermohalophilum DSM 5002 [QXDF]
319534
319458
-
Arg
CCT
[ENA]
¡û
>ENV09003325
ADGO01020062
Compost metagenome contig00001
304
380
+
Arg
CCT
[ENA]
¡û
Identical group No.441356 (1 seq.)
>ENV09003433
ADGO01041737
Compost metagenome contig00001
215
141
-
Arg
CCT
[ENA]
¡û
Identical group No.441381 (1 seq.)
>ENV09003654
ADGO01121446
Compost metagenome contig00001
166
242
+
Arg
CCT
[ENA]
¡û
Identical group No.441391 (1 seq.)
>ENV09003712
ADGO01147897
Compost metagenome contig00001
344
270
-
Arg
CCT
[ENA]
¡û
Identical group No.441409 (1 seq.)
>ENV09003860
ADGO01196196
Compost metagenome contig00001
135
210
+
Arg
CCT
[ENA]
¡û
Identical group No.441413 (1 seq.)
>ENV09003891
ADGO01204585
Compost metagenome contig00001
247
323
+
Arg
CCT
[ENA]
¡û
Identical group No.451707 (150 seq.)
>W1710854633
LLXQ01000005
Actinomycetota
Mycobacterium kyorinense [LLXQ]
22670
22745
+
Arg
CCT
[ENA]
¡û
>W1710866847
LMHU01000009
Actinomycetota
Terrabacter sp. Root181 [LMHU]
7503
7578
+
Arg
CCT
[ENA]
¡û
>W1710868173
LMIW01000010
Actinomycetota
Terrabacter sp. Root85 [LMIW]
290
365
+
Arg
CCT
[ENA]
¡û
>W1710881146
LMSW01000001
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
755559
755484
-
Arg
CCT
[ENA]
¡û
>W1710881229
LMSX01000014
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
8881
8956
+
Arg
CCT
[ENA]
¡û
>W1710923713
LOBU02000012
Actinomycetota
Amycolatopsis regifaucium [LOBU]
310286
310213
-
Arg
CCT
[ENA]
¡û
>W1710996467
LQBL01000022
Actinomycetota
Serinicoccus chungangensis [LQBL]
293113
293040
-
Arg
CCT
[ENA]
¡û
>W1710997811
LQCI01000003
Actinomycetota
Amycolatopsis regifaucium [LQCI]
310046
309973
-
Arg
CCT
[ENA]
¡û
>W1711004832
LQMT02000042
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
54144
54069
-
Arg
CCT
[ENA]
¡û
>W1711006624
LQOM01000031
Actinomycetota
Mycobacterium celatum [LQOM]
112451
112378
-
Arg
CCT
[ENA]
¡û
>W1711007462
LQPE01000085
Actinomycetota
Mycobacterium kyorinense [LQPE]
22720
22795
+
Arg
CCT
[ENA]
¡û
>W131181778
ARPK01000004
Actinomycetota
Amycolatopsis benzoatilytica AK 16/65 [ARPK]
3657413
3657489
+
Arg
CCT
[ENA]
¡û
>W1711312324
MAST01000045
Actinomycetota
Humibacillus sp. DSM 29435 [MAST]
130061
129988
-
Arg
CCT
[ENA]
¡û
>W1711343933
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
638927
638854
-
Arg
CCT
[ENA]
¡û
>W1711386178
MEEZ01000406
Actinomycetota
Pseudonocardia sp. SCN 72-51 [MEEZ]
3278
3205
-
Arg
CCT
[ENA]
¡û
>W1711386201
MEFA01000108
Actinomycetota
Pseudonocardia sp. SCN 72-86 [MEFA]
546
471
-
Arg
CCT
[ENA]
¡û
>W1711387151
MEGH01000098
Actinomycetota
Pseudonocardia sp. SCN 73-27 [MEGH]
4473
4546
+
Arg
CCT
[ENA]
¡û
>W1711491742
MKJV01000073
Actinomycetota
Pseudonocardia sp. CNS-004 [MKJV]
15125
15200
+
Arg
CCT
[ENA]
¡û
>W1711491930
MKJZ01000004
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
38477
38550
+
Arg
CCT
[ENA]
¡û
>W1711491982
MKKA01000008
Actinomycetota
Ornithinimicrobium sp. CNJ-824 [MKKA]
9395
9322
-
Arg
CCT
[ENA]
¡û
>W1711492209
MKKF01000011
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
137981
138054
+
Arg
CCT
[ENA]
¡û
>W1711517438
MLJO01000024
Actinomycetota
Intrasporangium flavum flava [MLJO]
29050
29125
+
Arg
CCT
[ENA]
¡û
>W1711662698
MQUP01000018
Actinomycetota
Amycolatopsis keratiniphila subsp. nogabecina [MQUP]
86432
86505
+
Arg
CCT
[ENA]
¡û
>W1711662726
MQUQ01000005
Actinomycetota
Amycolatopsis coloradensis [MQUQ]
372611
372538
-
Arg
CCT
[ENA]
¡û
>W1711694668
MSIE01000044
Actinomycetota
Actinophytocola xanthii 11-183 [MSIE]
77797
77722
-
Arg
CCT
[ENA]
¡û
>W1711749234
MUMI01000283
Actinomycetota
Amycolatopsis kentuckyensis [MUMI]
26868
26793
-
Arg
CCT
[ENA]
¡û
>W1711749251
MUMJ01000060
Actinomycetota
Amycolatopsis lexingtonensis [MUMJ]
55413
55340
-
Arg
CCT
[ENA]
¡û
>W1711765438
MUXN01000020
Actinomycetota
Amycolatopsis azurea DSM 43854 [MUXN]
97964
97891
-
Arg
CCT
[ENA]
¡û
>W1711772555
MVHM01000004
Actinomycetota
Mycobacterium branderi [MVHM]
101995
101920
-
Arg
CCT
[ENA]
¡û
>W131044936
AMRA01000097
Actinomycetota
Mycolicibacterium hassiacum DSM 44199 [AMRA]
24753
24826
+
Arg
CCT
[ENA]
¡û
>W131064612
ANMG01000023
Actinomycetota
Amycolatopsis azurea DSM 43854 [ANMG]
53812
53739
-
Arg
CCT
[ENA]
¡û
>W131091928
AOHO01000026
Actinomycetota
Amycolatopsis decaplanina DSM 44594 [AOHO]
83458
83383
-
Arg
CCT
[ENA]
¡û
>W131100475
AOUO01000260
Actinomycetota
Amycolatopsis vancoresmycina DSM 44592 [AOUO]
10542
10469
-
Arg
CCT
[ENA]
¡û
>W131158731
AQUL01000001
Actinomycetota
Amycolatopsis methanolica 239 [AQUL]
3953949
3954022
+
Arg
CCT
[ENA]
¡û
>W131164037
ARAF01000002
Actinomycetota
Amycolatopsis alba DSM 44262 [ARAF]
522285
522358
+
Arg
CCT
[ENA]
¡û
>W131165068
ARBH01000006
Actinomycetota
Amycolatopsis balhimycina FH 1894 [ARBH]
1412481
1412554
+
Arg
CCT
[ENA]
¡û
>W131165710
ARBU01000014
Actinomycetota
Mycolicibacterium hassiacum DSM 44199 [ARBU]
78588
78515
-
Arg
CCT
[ENA]
¡û
>W131181779
ARPK01000004
Actinomycetota
Amycolatopsis benzoatilytica AK 16/65 [ARPK]
3660963
3661038
+
Arg
CCT
[ENA]
¡û
>W131185555
ARTT01000016
Actinomycetota
Terracoccus sp. 273MFTsu3.1 [ARTT]
362067
362142
+
Arg
CCT
[ENA]
¡û
>W131191621
ASJB01000083
Actinomycetota
Amycolatopsis orientalis DSM 40040 = KCTC 9412 [ASJB]
214651
214724
+
Arg
CCT
[ENA]
¡û
>W131217047
ATWJ01000012
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
315155
315228
+
Arg
CCT
[ENA]
¡û
>W131217159
ATWM01000003
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
444008
443935
-
Arg
CCT
[ENA]
¡û
>C171034682
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
1539245
1539172
-
Arg
CCT
-
¡û
>C171046333
CP016174
Actinomycetota
Amycolatopsis orientalis B-37 [CP016174]
1006255
1006182
-
Arg
CCT
-
¡û
>WENV180032025
FTJU01010387
[FTJU] metagenome; soil
997
922
-
Arg
CCT
[ENA]
¢þ
>WENV180343431
OBLK01015649
[OBLK] soil metagenome; Clay
325
400
+
Arg
CCT
[ENA]
¢þ
>WENV180690807
OCZS010026171
[OCZS] soil metagenome; soil
272
347
+
Arg
CCT
[ENA]
¢þ
>W141142494
AWQS01000131
Actinomycetota
Intrasporangium chromatireducens Q5-1 [AWQS]
1083
1010
-
Arg
CCT
[ENA]
¡û
>W141143095
AWSA01000087
Actinomycetota
Intrasporangium oryzae NRRL B-24470 [AWSA]
9180
9255
+
Arg
CCT
[ENA]
¡û
>W141151772
AXBH01000005
Actinomycetota
Amycolatopsis thermoflava N1165 [AXBH]
347733
347658
-
Arg
CCT
[ENA]
¡û
>W141238283
BBKA01000018
Actinomycetota
Mycobacterium kyorinense [BBKA]
40771
40696
-
Arg
CCT
[ENA]
¡û
>W141278074
JAFB01000026
Actinomycetota
Amycolatopsis taiwanensis DSM 45107 [JAFB]
66932
67005
+
Arg
CCT
[ENA]
¡û
>W141278568
JAFQ01000004
Actinomycetota
Nocardia sp. BMG51109 [JAFQ]
1228548
1228623
+
Arg
CCT
[ENA]
¡û
>W141451892
JFBM01000002
Actinomycetota
Amycolatopsis lurida NRRL 2430 [JFBM]
356167
356240
+
Arg
CCT
[ENA]
¡û
>C181016760
CP015163
Actinomycetota
Amycolatopsis albispora WP1 [CP015163]
5393266
5393339
+
Arg
CCT
-
¡û
>C181028434
CP017780
Actinomycetota
Amycolatopsis sp. BJA-103 [CP017780]
6633762
6633835
+
Arg
CCT
-
¡û
>C181196317
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
758577
758504
-
Arg
CCT
-
¡û
>C181197172
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
3280810
3280737
-
Arg
CCT
-
¡û
>C181215404
LS483468
Actinomycetota
Rhodococcus coprophilus NCTC10994 [LS483468]
1909894
1909967
+
Arg
CCT
-
¡û
>C191150895
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
560133
560206
+
Arg
CCT
-
¡û
>C191158364
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
638433
638506
+
Arg
CCT
-
¡û
>C191183657
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
521912
521985
+
Arg
CCT
-
¡û
>C191189828
LR026975
Actinomycetota
Mycolicibacterium hassiacum DSM 44199 [LR026975]
3610899
3610972
+
Arg
CCT
-
¡û
>W141712152
JMQI01000083
Actinomycetota
Amycolatopsis rifamycinica [JMQI]
102849
102774
-
Arg
CCT
[ENA]
¡û
>W141757780
JNYD01000015
Actinomycetota
Pseudonocardia autotrophica [JNYD]
91754
91827
+
Arg
CCT
[ENA]
¡û
>W141758944
JNYY01000031
Actinomycetota
Amycolatopsis vancoresmycina [JNYY]
52343
52416
+
Arg
CCT
[ENA]
¡û
>W141758949
JNYZ01000003
Actinomycetota
Amycolatopsis jejuensis [JNYZ]
246139
246212
+
Arg
CCT
[ENA]
¡û
>W141766889
JOEG01000034
Actinomycetota
Actinocatenispora sera [JOEG]
34351
34426
+
Arg
CCT
[ENA]
¡û
>W141767099
JOEK01000007
Actinomycetota
Streptomyces avicenniae [JOEK]
93713
93638
-
Arg
CCT
[ENA]
¡û
>W141773534
JOIN01000003
Actinomycetota
Corynebacterium variabile [JOIN]
318349
318274
-
Arg
CCT
[ENA]
¡û
>W141806133
JPLW01000003
Actinomycetota
Amycolatopsis sp. MJM2582 [JPLW]
38848
38773
-
Arg
CCT
[ENA]
¡û
>W1910038442
BEGX01000128
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
115056
115129
+
Arg
CCT
[ENA]
¡û
>W1910812651
MVFD01000001
Actinomycetota
Amycolatopsis sp. BJA-103 [MVFD]
734597
734524
-
Arg
CCT
[ENA]
¡û
>W1910994825
NKYF01000001
Actinomycetota
Pseudonocardia sp. MH-G8 [NKYF]
1196108
1196181
+
Arg
CCT
[ENA]
¡û
>W1911071525
NMQT01000024
Actinomycetota
Amycolatopsis thailandensis JCM 16380 [NMQT]
8530
8603
+
Arg
CCT
[ENA]
¡û
>W1911071591
NMQU01000031
Actinomycetota
Amycolatopsis alba DSM 44262 [NMQU]
140469
140542
+
Arg
CCT
[ENA]
¡û
>W1911075171
NMUK01000031
Actinomycetota
Amycolatopsis sp. KNN50.9b [NMUK]
84169
84096
-
Arg
CCT
[ENA]
¡û
>W1911075243
NMUL01000023
Actinomycetota
Amycolatopsis vastitatis H5 [NMUL]
265532
265605
+
Arg
CCT
[ENA]
¡û
>W1911495857
OBQK01000007
Actinomycetota
Ornithinimicrobium cerasi USBA17B2 [OBQK]
184329
184402
+
Arg
CCT
[ENA]
¡û
>W1911676643
QHHU01000029
Actinomycetota
Amycolatopsis balhimycina DSM 5908 [QHHU]
23677
23750
+
Arg
CCT
[ENA]
¡û
>W1911676761
QHHW01000017
Actinomycetota
Amycolatopsis sp. WAC 01375 [QHHW]
27577
27504
-
Arg
CCT
[ENA]
¡û
>W1911676829
QHHX01000005
Actinomycetota
Amycolatopsis sp. WAC 01416 [QHHX]
44759
44686
-
Arg
CCT
[ENA]
¡û
>W1911678701
QHJI01000012
Actinomycetota
Amycolatopsis sp. WAC 04169 [QHJI]
167796
167723
-
Arg
CCT
[ENA]
¡û
>W1911678722
QHJJ01000001
Actinomycetota
Amycolatopsis sp. WAC 04182 [QHJJ]
1367210
1367283
+
Arg
CCT
[ENA]
¡û
>W1911678792
QHJK01000002
Actinomycetota
Amycolatopsis sp. WAC 04197 [QHJK]
866125
866052
-
Arg
CCT
[ENA]
¡û
>W1911678933
QHJM01000034
Actinomycetota
Streptomyces sp. WAC 05977 [QHJM]
26595
26522
-
Arg
CCT
[ENA]
¡û
>W1911679703
QHKL01000002
Actinomycetota
Amycolatopsis sp. WAC 01376 [QHKL]
104211
104138
-
Arg
CCT
[ENA]
¡û
>W1911817411
QZMN01000003
Actinomycetota
Ornithinimicrobium cerasi CPCC 203383 [QZMN]
126308
126381
+
Arg
CCT
[ENA]
¡û
>W1810003486
BFAB01000002
Actinomycetota
Mycobacterium sp. MFM001 [BFAB]
545947
546020
+
Arg
CCT
[ENA]
¡û
>W1810058861
PDKV01000007
Actinomycetota
Mycobacterium celatum NCTC 12882 [PDKV]
112451
112378
-
Arg
CCT
[ENA]
¡û
>W1810237609
PPHF01000030
Actinomycetota
Amycolatopsis sp. CA-126428 [PPHF]
191191
191117
-
Arg
CCT
[ENA]
¡û
>W1810237700
PPHG01000096
Actinomycetota
Amycolatopsis sp. CA-128772 [PPHG]
191604
191531
-
Arg
CCT
[ENA]
¡û
>W1810254766
PQHW01000022
Actinomycetota
Amycolatopsis thermalba NRRL B-24845 [PQHW]
50200
50273
+
Arg
CCT
[ENA]
¡û
>W1810254801
PQHX01000003
Actinomycetota
Amycolatopsis thermalba 50.9b [PQHX]
175045
175118
+
Arg
CCT
[ENA]
¡û
>W1810254852
PQHY01000002
Actinomycetota
Amycolatopsis ruanii 49.3e [PQHY]
19883
19810
-
Arg
CCT
[ENA]
¡û
>W1810254921
PQHZ01000016
Actinomycetota
Amycolatopsis palatopharyngis DSM 44832 [PQHZ]
98099
98026
-
Arg
CCT
[ENA]
¡û
>W1810535039
QDDJ01000010
Actinomycetota
Ornithinimicrobium cavernae KCTC 49018 [QDDJ]
98125
98198
+
Arg
CCT
[ENA]
¡û
>W1810697592
QLVD01000023
Actinomycetota
Ornithinimicrobium murale DSM 22056 [QLVD]
267483
267556
+
Arg
CCT
[ENA]
¡û
>W1810763325
QQAZ01000012
Actinomycetota
Nocardia mexicana DSM 44952 [QQAZ]
236779
236852
+
Arg
CCT
[ENA]
¡û
>W1810861677
QTUA01000001
Actinomycetota
Calidifontibacter indicus DSM 22967 [QTUA]
1246699
1246624
-
Arg
CCT
[ENA]
¡û
>C151018956
CP007219
Actinomycetota
Amycolatopsis lurida [CP007219]
780353
780426
+
Arg
CCT
-
¡û
>C151040882
CP008953
Actinomycetota
Amycolatopsis japonica MG417-CF17 [CP008953]
693756
693681
-
Arg
CCT
[Ensembl]
¡û
>C151044221
CP009110
Actinomycetota
Amycolatopsis methanolica 239 [CP009110]
6259498
6259571
+
Arg
CCT
[Ensembl]
¡û
>C151074992
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
4962828
4962901
+
Arg
CCT
-
¡û
>C151090438
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
171338
171413
+
Arg
CCT
-
¡û
>ENV09003746
ADGO01165319
Compost metagenome contig00001
289
362
+
Arg
CCT
[ENA]
¡û
>W1510018876
BBUN01000221
Actinomycetota
Mycobacterium celatum ATCC 51131 [BBUN]
12341
12414
+
Arg
CCT
[ENA]
¡û
>W1510071698
CDGT01000021
Actinomycetota
Mobilicoccus massiliensis SIT2 [CDGT]
400787
400714
-
Arg
CCT
[ENA]
¡û
>W10118415
ADUJ01000794
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
27928
27855
-
Arg
CCT
[ENA]
¡û
>C11111451
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
957527
957454
-
Arg
CCT
[Ensembl]
¡û
>W11123490
ADUJ01000794
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
27928
27855
-
Arg
CCT
[ENA]
¡û
>W1511509642
JXRD01000054
Actinomycetota
Amycolatopsis orientalis B-37 [JXRD]
21580
21507
-
Arg
CCT
[ENA]
¡û
>W1511534709
JYOE01000002
Actinomycetota
Terrabacter sp. 28 [JYOE]
60250
60325
+
Arg
CCT
[ENA]
¡û
>W11176378
AFWY01000011
Actinomycetota
Amycolatopsis sp. ATCC 39116 [AFWY]
1184548
1184475
-
Arg
CCT
[ENA]
¡û
>W11177020
AFYF01000061
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
70003
69930
-
Arg
CCT
[ENA]
¡û
>C161040322
CP012181
Actinomycetota
Pseudonocardia sp. EC080610-09 [CP012181]
452525
452598
+
Arg
CCT
-
¡û
>C161040381
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
2158978
2159051
+
Arg
CCT
[Ensembl]
¡û
>W121123842
BAEH01000039
Actinomycetota
Gordonia effusa NBRC 100432 [BAEH]
55006
54933
-
Arg
CCT
[ENA]
¡û
>W121124426
BAFE01000056
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
113904
113979
+
Arg
CCT
[ENA]
¡û
>W121125652
BAGE01000018
Actinomycetota
Nocardia paucivorans NBRC 100373 [BAGE]
158001
157926
-
Arg
CCT
[ENA]
¡û
>W121126658
BAHD01000097
Actinomycetota
Kineosphaera limosa NBRC 100340 [BAHD]
7083
7158
+
Arg
CCT
[ENA]
¡û
>W1610050391
BBFU01001008
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
646
573
-
Arg
CCT
[ENA]
¡û
>W1610062573
BCNQ01000024
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
9185
9258
+
Arg
CCT
[ENA]
¡û
>W1610079691
BDBV01000040
Actinomycetota
Nocardia mexicana NBRC 108244 [BDBV]
978
905
-
Arg
CCT
[ENA]
¡û
>C131003632
CP003410
Actinomycetota
Amycolatopsis keratiniphila HCCB10007 [CP003410]
7919392
7919465
+
Arg
CCT
[Ensembl]
¡û
>W1610614915
LGKF01002179
Actinomycetota
Streptomyces sp. NRRL WC-3753 [LGKF]
244129
244056
-
Arg
CCT
[ENA]
¡û
>W1610716910
LLXQ01000005
Actinomycetota
Mycobacterium kyorinense [LLXQ]
22670
22745
+
Arg
CCT
[ENA]
¡û
>W1610729193
LMHU01000009
Actinomycetota
Terrabacter sp. Root181 [LMHU]
7503
7578
+
Arg
CCT
[ENA]
¡û
>W1610730519
LMIW01000010
Actinomycetota
Terrabacter sp. Root85 [LMIW]
290
365
+
Arg
CCT
[ENA]
¡û
>W1610743492
LMSW01000001
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
755559
755484
-
Arg
CCT
[ENA]
¡û
>W1610743575
LMSX01000014
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
8881
8956
+
Arg
CCT
[ENA]
¡û
>W1610781214
LOBU01000014
Actinomycetota
Amycolatopsis regifaucium [LOBU]
132748
132675
-
Arg
CCT
[ENA]
¡û
>W1610851124
LQBL01000022
Actinomycetota
Serinicoccus chungangensis [LQBL]
293113
293040
-
Arg
CCT
[ENA]
¡û
>W1610852540
LQCI01000003
Actinomycetota
Amycolatopsis regifaucium [LQCI]
310046
309973
-
Arg
CCT
[ENA]
¡û
>W1610855423
LQMT01000101
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
50149
50224
+
Arg
CCT
[ENA]
¡û
>W1710046790
BBFU01001008
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
646
573
-
Arg
CCT
[ENA]
¡û
>W1710060049
BCNQ01000024
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
9185
9258
+
Arg
CCT
[ENA]
¡û
>W1710076513
BDAM01000008
Actinomycetota
Rhodococcus coprophilus NBRC 100603 [BDAM]
34245
34318
+
Arg
CCT
[ENA]
¡û
>W1710078250
BDBV01000040
Actinomycetota
Nocardia mexicana NBRC 108244 [BDBV]
978
905
-
Arg
CCT
[ENA]
¡û
>W1710530142
FNON01000003
Actinomycetota
Amycolatopsis xylanica [FNON]
1076768
1076841
+
Arg
CCT
[ENA]
¡û
>W1710535481
FNSO01000004
Actinomycetota
Amycolatopsis tolypomycina [FNSO]
7430031
7430106
+
Arg
CCT
[ENA]
¡û
>W1710536172
FNTA01000004
Actinomycetota
Amycolatopsis lurida [FNTA]
5138229
5138156
-
Arg
CCT
[ENA]
¡û
>W1710552774
FOHB01000008
Actinomycetota
Pedococcus cremeus [FOHB]
160689
160614
-
Arg
CCT
[ENA]
¡û
>W1710556515
FOKG01000013
Actinomycetota
Amycolatopsis marina [FOKG]
128195
128268
+
Arg
CCT
[ENA]
¡û
>W1710557978
FOLM01000002
Actinomycetota
Streptomyces aidingensis [FOLM]
245326
245401
+
Arg
CCT
[ENA]
¡û
>W1710563401
FOPQ01000010
Actinomycetota
Amycolatopsis regifaucium [FOPQ]
296933
296860
-
Arg
CCT
[ENA]
¡û
>W1710565913
FORP01000014
Actinomycetota
Amycolatopsis sacchari [FORP]
68117
68044
-
Arg
CCT
[ENA]
¡û
>W1710580382
FPJG01000006
Actinomycetota
Amycolatopsis australiensis [FPJG]
2071697
2071624
-
Arg
CCT
[ENA]
¡û
>W1710736161
LGKF01002179
Actinomycetota
Streptomyces sp. NRRL WC-3753 [LGKF]
244129
244056
-
Arg
CCT
[ENA]
¡û
>W1710773663
LIWC01000002
Actinomycetota
Amycolatopsis sp. CB00013 [LIWC]
345304
345377
+
Arg
CCT
[ENA]
¡û
Identical group No.586294 (3 seq.)
>WENV170771049
LXNI01000325
[LXNI] sponge metagenome; marine sponge reef
19736
19663
-
Arg
CCT
[ENA]
¢þ
>WENV170958120
MKWU01000540
[MKWU] sponge metagenome;
69505
69578
+
Arg
CCT
[ENA]
¢þ
>ENV09003261
ADGO01014170
Compost metagenome contig00001
325
398
+
Arg
CCT
[ENA]
¡û
Identical group No.641724 (1 seq.)
>ENV09002979
ADGO01000475
Compost metagenome contig00001
942
1014
+
Arg
CCT
[ENA]
¡û
Identical group No.641761 (1 seq.)
>ENV09003354
ADGO01023747
Compost metagenome contig00001
355
428
+
Arg
CCT
[ENA]
¡û
Identical group No.641765 (1 seq.)
>ENV09003385
ADGO01028915
Compost metagenome contig00001
342
417
+
Arg
CCT
[ENA]
¡û
Identical group No.641766 (1 seq.)
>ENV09003387
ADGO01028916
Compost metagenome contig00001
2468
2543
+
Arg
CCT
[ENA]
¡û
Identical group No.641767 (1 seq.)
>ENV09003395
ADGO01030832
Compost metagenome contig00001
637
562
-
Arg
CCT
[ENA]
¡û
Identical group No.641787 (1 seq.)
>ENV09003493
ADGO01066349
Compost metagenome contig00001
83
157
+
Arg
CCT
[ENA]
¡û
Identical group No.641817 (1 seq.)
>ENV09003647
ADGO01119583
Compost metagenome contig00001
288
361
+
Arg
CCT
[ENA]
¡û
Identical group No.667550 (51 seq.)
>W1710894067
LNFJ01000014
Bacteroidota
Bacteroidia bacterium Ga0077558 [LNFJ]
96243
96169
-
Arg
CCT
[ENA]
¡û
>W1711168258
LVXG01000015
Bacteroidota
Niastella yeongjuensis [LVXG]
18167
18095
-
Arg
CCT
[ENA]
¡û
>W1711168520
LVYD01000013
Bacteroidota
Niastella vici [LVYD]
157402
157478
+
Arg
CCT
[ENA]
¡û
>W1711171936
LWBO01000022
Bacteroidota
Niastella koreensis [LWBO]
94111
94039
-
Arg
CCT
[ENA]
¡û
>W1711171996
LWBP01000254
Bacteroidota
Niastella populi [LWBP]
316230
316304
+
Arg
CCT
[ENA]
¡û
>W1711503752
MKTW01000018
Bacteroidota
Sphingobacteriales bacterium 44-61 [MKTW]
2664
2592
-
Arg
CCT
[ENA]
¡û
>WENV180283484
OBID01000244
[OBID] metagenome; sludge
12091
12163
+
Arg
CCT
[ENA]
¢þ
>WENV181163803
OEIQ01263487
[OEIQ] soil metagenome; soil
166
94
-
Arg
CCT
[ENA]
¢þ
>WENV181164384
OEIR01138159
[OEIR] soil metagenome; soil
125
53
-
Arg
CCT
[ENA]
¢þ
>WENV181185864
OEMC01000354
[OEMC] metagenome; 1998
11007
10933
-
Arg
CCT
[ENA]
¢þ
>WENV181188350
OEOE01095176
[OEOE] activated sludge metagenome; Activated Sludge
160
232
+
Arg
CCT
[ENA]
¢þ
>WENV181367267
OFPX01000623
[OFPX] freshwater metagenome; Freshwater Lake
273
201
-
Arg
CCT
[ENA]
¢þ
>WENV181402340
OFTY01000717
[OFTY] sludge metagenome; sludge
1605
1680
+
Arg
CCT
[ENA]
¢þ
>WENV181415096
OGCL01003984
[OGCL] hot springs metagenome; Hot spring water
6460
6532
+
Arg
CCT
[ENA]
¢þ
>WENV181842081
OGVS01030976
[OGVS] freshwater metagenome; freshwater
303
231
-
Arg
CCT
[ENA]
¢þ
>WENV181854358
OGWK01000676
[OGWK] freshwater metagenome; freshwater
1311
1383
+
Arg
CCT
[ENA]
¢þ
>WENV181858913
OGWP01049393
[OGWP] freshwater metagenome; freshwater
286
358
+
Arg
CCT
[ENA]
¢þ
>WENV182865943
OKRQ01007430
[OKRQ] freshwater metagenome; freshwater
941
869
-
Arg
CCT
[ENA]
¢þ
>WENV183725483
PJQF01000143
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
42173
42101
-
Arg
CCT
[ENA]
¢þ
>WENV170000165
AERA01018846
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
7117
7189
+
Arg
CCT
[ENA]
¢þ
>WENV170010266
APMI01012026
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1038
1112
+
Arg
CCT
[ENA]
¢þ
>WENV170010690
APMI01025400
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2676
2748
+
Arg
CCT
[ENA]
¢þ
>WENV170357208
CETJ01125471
[CETJ] marine metagenome genome assembly TARA_122_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
473
401
-
Arg
CCT
[ENA]
¢þ
>WENV170359951
CETL01044141
[CETL] marine metagenome genome assembly TARA_112_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
25217
25145
-
Arg
CCT
[ENA]
¢þ
>WENV170365432
CETN01073956
[CETN] marine metagenome genome assembly TARA_122_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5956
5884
-
Arg
CCT
[ENA]
¢þ
>WENV170367408
CETP01016383
[CETP] marine metagenome genome assembly TARA_122_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
52048
52120
+
Arg
CCT
[ENA]
¢þ
>WENV170565749
FKKE01000443
[FKKE] freshwater metagenome; freshwater
11137
11211
+
Arg
CCT
[ENA]
¢þ
>WENV170652079
JRYG01072595
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
28
102
+
Arg
CCT
[ENA]
¢þ
>WENV170710219
LNFM01001323
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
47556
47482
-
Arg
CCT
[ENA]
¢þ
>WENV170896493
MDTD01096358
[MDTD] marine metagenome; seawater
52055
52127
+
Arg
CCT
[ENA]
¢þ
>WENV170938986
MDTG01318086
[MDTG] marine metagenome; seawater
67791
67863
+
Arg
CCT
[ENA]
¢þ
>WENV170977658
MTKZ01028658
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5578
5652
+
Arg
CCT
[ENA]
¢þ
>WENV170983895
MWVV01115502
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
415
487
+
Arg
CCT
[ENA]
¢þ
>WENV170983966
MWVV01133413
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
506
432
-
Arg
CCT
[ENA]
¢þ
>WENV170985986
MWVX01010198
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1669
1593
-
Arg
CCT
[ENA]
¢þ
>WENV170986898
MWVX01094127
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
358
432
+
Arg
CCT
[ENA]
¢þ
>WENV170986961
MWVX01103638
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
325
401
+
Arg
CCT
[ENA]
¢þ
>WENV170987586
MWVX01221386
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
387
461
+
Arg
CCT
[ENA]
¢þ
>WENV170987874
MWVX01300433
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
174
246
+
Arg
CCT
[ENA]
¢þ
>WENV170988658
MWVX01570309
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
55
129
+
Arg
CCT
[ENA]
¢þ
>WENV170995356
MWWF01002033
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
417
343
-
Arg
CCT
[ENA]
¢þ
>WENV170995902
MWWF01087207
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
599
525
-
Arg
CCT
[ENA]
¢þ
>WENV170996008
MWWF01115669
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
306
232
-
Arg
CCT
[ENA]
¢þ
>WENV170997691
MWWH01000728
[MWWH] soil metagenome; MG3-2 sample; Antarctic (ecotone) soil
5388
5464
+
Arg
CCT
[ENA]
¢þ
>W1810682103
QKTW01000002
Bacteroidota
Taibaiella soli R1-15 [QKTW]
76944
77016
+
Arg
CCT
[ENA]
¡û
>ENV09003172
ADGO01008329
Compost metagenome contig00001
228
154
-
Arg
CCT
[ENA]
¡û
>ENV09003185
ADGO01009488
Compost metagenome contig00001
172
100
-
Arg
CCT
[ENA]
¡û
>WENV11100523
AERA01018846
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
7117
7189
+
Arg
CCT
[ENA]
¡û
>C121007531
CP003178
Bacteroidota
Niastella koreensis GR20-10 [CP003178]
7457507
7457435
-
Arg
CCT
[Ensembl]
¡û
>W1610754333
LNFJ01000014
Bacteroidota
Bacteroidia bacterium Ga0077558 [LNFJ]
96243
96169
-
Arg
CCT
[ENA]
¡û
>W1710547499
FOCZ01000017
Bacteroidota
Niastella yeongjuensis [FOCZ]
18469
18397
-
Arg
CCT
[ENA]
¡û
Identical group No.772197 (1 seq.)
>ENV09003079
ADGO01003984
Compost metagenome contig00001
72
145
+
Pseudo
CCT
[ENA]
¡û
Identical group No.772220 (1 seq.)
>ENV09003380
ADGO01028066
Compost metagenome contig00001
393
322
-
Arg
CCT
[ENA]
¡û
Identical group No.834023 (1 seq.)
>ENV09003145
ADGO01006868
Compost metagenome contig00001
307
234
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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