This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Compost metagenome contig00001
Anticodon = CGA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.19395 (1 seq.)
>ENV09003003
ADGO01001108
Compost metagenome contig00001
548
456
-
Ser
CGA
[ENA]
¡û
Identical group No.19399 (1 seq.)
>ENV09003435
ADGO01042398
Compost metagenome contig00001
174
82
-
Ser
CGA
[ENA]
¡û
Identical group No.29700 (1 seq.)
>ENV09003372
ADGO01026775
Compost metagenome contig00001
197
106
-
Ser
CGA
[ENA]
¡û
Identical group No.44771 (1 seq.)
>ENV09003719
ADGO01153510
Compost metagenome contig00001
389
479
+
Ser
CGA
[ENA]
¡û
Identical group No.51255 (2 seq.)
>WENV180691366
OCZS010107709
[OCZS] soil metagenome; soil
633
722
+
Ser
CGA
[ENA]
¢þ
>ENV09003305
ADGO01018176
Compost metagenome contig00001
112
201
+
Ser
CGA
[ENA]
¡û
Identical group No.58424 (7 seq.)
>WENV180295819
OBIZ01349908
[OBIZ] soil metagenome; soil
105
194
+
Ser
CGA
[ENA]
¢þ
>WENV181155469
OEID01185329
[OEID] soil metagenome; soil
60
149
+
Ser
CGA
[ENA]
¢þ
>WENV181162235
OEIN01011436
[OEIN] soil metagenome; soil
173
84
-
Ser
CGA
[ENA]
¢þ
>WENV181164967
OEIR01492087
[OEIR] soil metagenome; soil
50
139
+
Ser
CGA
[ENA]
¢þ
>W1911148530
NPEX01000502
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
2101
2012
-
Ser
CGA
[ENA]
¡û
>ENV09003228
ADGO01012506
Compost metagenome contig00001
333
244
-
Ser
CGA
[ENA]
¡û
>C161016811
CP007440
Alphaproteobacteria
Rhodoplanes sp. Z2-YC6860 [CP007440]
632549
632638
+
Ser
CGA
[Ensembl]
¡û
Identical group No.71233 (1 seq.)
>ENV09003150
ADGO01007174
Compost metagenome contig00001
1965
2054
+
Ser
CGA
[ENA]
¡û
Identical group No.71235 (1 seq.)
>ENV09003309
ADGO01018654
Compost metagenome contig00001
337
248
-
Ser
CGA
[ENA]
¡û
Identical group No.71238 (1 seq.)
>ENV09003514
ADGO01077667
Compost metagenome contig00001
154
67
-
Ser
CGA
[ENA]
¡û
Identical group No.110828 (1 seq.)
>ENV09003678
ADGO01131936
Compost metagenome contig00001
86
1
-
Ser
CGA
[ENA]
¡û
Identical group No.151372 (1 seq.)
>ENV09003230
ADGO01012662
Compost metagenome contig00001
28
112
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK