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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Compost metagenome contig00001
Anticodon = CGT
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.441326 (1 seq.)
>ENV09003099
ADGO01004856
Compost metagenome contig00001
3812
3736
-
Thr
CGT
[ENA]
¡û
Identical group No.441351 (1 seq.)
>ENV09003392
ADGO01029907
Compost metagenome contig00001
424
498
+
Thr
CGT
[ENA]
¡û
Identical group No.491625 (10 seq.)
>C015256
CP000127
Gammaproteobacteria
Nitrosococcus oceani ATCC 19707 [CP000127]
2170549
2170474
-
Thr
CGT
[Ensembl]
¡û
>WENV180282692
OBIC01001386
[OBIC] beach sand metagenome; beach sand
2120
2045
-
Thr
CGT
[ENA]
¢þ
>WENV180309519
OBJS01004266
[OBJS] beach sand metagenome; beach sand
723
648
-
Thr
CGT
[ENA]
¢þ
>W08011078
ABSG01000019
Gammaproteobacteria
Nitrosococcus oceani C-27 [ABSG]
145756
145684
-
Thr
CGT
[ENA]
¡û
>WENV170646269
JQGG01104510
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
84
9
-
Thr
CGT
[ENA]
¢þ
>W141802323
JPFN01000076
Gammaproteobacteria
Nitrosococcus oceani [JPFN]
995
920
-
Thr
CGT
[ENA]
¡û
>W141803318
JPGN01000061
Gammaproteobacteria
Nitrosococcus oceani C-27 [JPGN]
18790
18715
-
Thr
CGT
[ENA]
¡û
>W1810305965
PTQZ01000272
Gammaproteobacteria
Amnimonas aquatica HR-E [PTQZ]
134
59
-
Thr
CGT
[ENA]
¡û
>ENV09003843
ADGO01192252
Compost metagenome contig00001
213
288
+
Thr
CGT
[ENA]
¡û
>C10109944
CP002086
Gammaproteobacteria
Nitrosococcus watsonii C-113 [CP002086]
1858433
1858358
-
Thr
CGT
[Ensembl]
¡û
Identical group No.522977 (2 seq.)
>WENV170650076
JRYD01009450
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
4356
4281
-
Thr
CGT
[ENA]
¢þ
>ENV09003352
ADGO01023448
Compost metagenome contig00001
1321
1246
-
Thr
CGT
[ENA]
¡û
Identical group No.641732 (1 seq.)
>ENV09003026
ADGO01001866
Compost metagenome contig00001
414
339
-
Thr
CGT
[ENA]
¡û
Identical group No.641753 (1 seq.)
>ENV09003283
ADGO01015845
Compost metagenome contig00001
352
424
+
Thr
CGT
[ENA]
¡û
Identical group No.641756 (1 seq.)
>ENV09003293
ADGO01016994
Compost metagenome contig00001
222
147
-
Thr
CGT
[ENA]
¡û
Identical group No.641762 (1 seq.)
>ENV09003359
ADGO01024256
Compost metagenome contig00001
257
332
+
Thr
CGT
[ENA]
¡û
Identical group No.641819 (1 seq.)
>ENV09003662
ADGO01124490
Compost metagenome contig00001
79
152
+
Thr
CGT
[ENA]
¡û
Identical group No.641842 (1 seq.)
>ENV09003790
ADGO01176598
Compost metagenome contig00001
19
94
+
Thr
CGT
[ENA]
¡û
Identical group No.641852 (1 seq.)
>ENV09003836
ADGO01191196
Compost metagenome contig00001
240
315
+
Thr
CGT
[ENA]
¡û
Identical group No.772200 (1 seq.)
>ENV09003106
ADGO01005115
Compost metagenome contig00001
330
402
+
Thr
CGT
[ENA]
¡û
Identical group No.772213 (1 seq.)
>ENV09003358
ADGO01024143
Compost metagenome contig00001
56
130
+
Thr
CGT
[ENA]
¡û
Identical group No.772233 (1 seq.)
>ENV09003494
ADGO01066969
Compost metagenome contig00001
166
240
+
Thr
CGT
[ENA]
¡û
Identical group No.772244 (1 seq.)
>ENV09003741
ADGO01163561
Compost metagenome contig00001
106
178
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK