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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Compost metagenome contig00001
Anticodon = CTG
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.641801 (1 seq.)
>ENV09003581
ADGO01095286
Compost metagenome contig00001
486
414
-
Gln
CTG
[ENA]
¡û
Identical group No.641824 (1 seq.)
>ENV09003698
ADGO01140609
Compost metagenome contig00001
27
101
+
Gln
CTG
[ENA]
¡û
Identical group No.678657 (35 seq.)
>W1710857000
LLZU01000002
Actinomycetota
Wenjunlia vitaminophila vitaminophilus [LLZU]
4158
4230
+
Gln
CTG
[ENA]
¡û
>W131166385
ARCK01000043
Actinomycetota
Wenjunlia vitaminophila DSM 41686 [ARCK]
5857
5929
+
Gln
CTG
[ENA]
¡û
>W1711792247
MWJN01000002
Actinomycetota
Microbispora sp. GKU 823 [MWJN]
198154
198082
-
Gln
CTG
[ENA]
¡û
>WENV180694257
OCZS012129106
[OCZS] soil metagenome; soil
90
162
+
Gln
CTG
[ENA]
¢þ
>WENV181166144
OEIS01499337
[OEIS] soil metagenome; soil
132
60
-
Gln
CTG
[ENA]
¢þ
>WENV181172221
OEIV010547465
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
149
221
+
Gln
CTG
[ENA]
¢þ
>W141135810
AWEV01000266
Actinomycetota
Microbispora sp. ATCC PTA-5024 [AWEV]
63974
64046
+
Gln
CTG
[ENA]
¡û
>C181198620
CP031264
Actinomycetota
Peterkaempfera bronchialis DSM 106435 [CP031264]
4793018
4793090
+
Gln
CTG
-
¡û
>C181198624
CP031264
Actinomycetota
Peterkaempfera bronchialis DSM 106435 [CP031264]
4793444
4793516
+
Gln
CTG
-
¡û
>W141759639
JNZM01000600
Actinomycetota
Microbispora rosea subsp. rosea [JNZM]
1110
1182
+
Gln
CTG
[ENA]
¡û
>W141759844
JNZQ01000002
Actinomycetota
Microbispora rosea subsp. nonnitritogenes [JNZQ]
214550
214478
-
Gln
CTG
[ENA]
¡û
>W1910548107
FZOH01000001
Actinomycetota
Geodermatophilus saharensis DSM 45423 [FZOH]
761833
761905
+
Gln
CTG
[ENA]
¡û
>W1810594507
QFZU02000025
Actinomycetota
Microbispora triticiradicis NEAU-HRDPA2-9 [QFZU]
20076
20148
+
Gln
CTG
[ENA]
¡û
>W1810609376
QGTX01000001
Actinomycetota
Geodermatophilus normandii DSM 45417 [QGTX]
2379276
2379348
+
Gln
CTG
[ENA]
¡û
>W1810676840
QKMH01000001
Actinomycetota
Geodermatophilus sp. DSM 44511 [QKMH]
105326
105254
-
Gln
CTG
[ENA]
¡û
>W1810733359
QOHF01000004
Actinomycetota
Geodermatophilus sp. TF02-6 [QOHF]
159417
159489
+
Gln
CTG
[ENA]
¡û
>W1810915019
QVQH01000027
Actinomycetota
Geodermatophilus sp. LHW52908 [QVQH]
23686
23614
-
Gln
CTG
[ENA]
¡û
>ENV09003299
ADGO01017749
Compost metagenome contig00001
490
562
+
Gln
CTG
[ENA]
¡û
>W1610050954
BBGI01000912
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BBGI]
806
734
-
Gln
CTG
[ENA]
¡û
>W1610060603
BCBX01000033
Actinomycetota
Microbispora sp. GMKU363 [BCBX]
203381
203453
+
Gln
CTG
[ENA]
¡û
>W1610068455
BCRI01000238
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BCRI]
1378
1306
-
Gln
CTG
[ENA]
¡û
>W1610633355
LIQR01000045
Actinomycetota
Peterkaempfera griseoplana griseoplanus [LIQR]
11356
11282
-
Gln
CTG
[ENA]
¡û
>W1610633359
LIQR01000045
Actinomycetota
Peterkaempfera griseoplana griseoplanus [LIQR]
10928
10854
-
Gln
CTG
[ENA]
¡û
>W1610719381
LLZU01000002
Actinomycetota
Wenjunlia vitaminophila vitaminophilus [LLZU]
4158
4230
+
Gln
CTG
[ENA]
¡û
>W1710047353
BBGI01000912
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BBGI]
806
734
-
Gln
CTG
[ENA]
¡û
>W1710057858
BCBX01000033
Actinomycetota
Microbispora sp. GMKU363 [BCBX]
203381
203453
+
Gln
CTG
[ENA]
¡û
>W1710065828
BCRI01000238
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BCRI]
1378
1306
-
Gln
CTG
[ENA]
¡û
>W1710531050
FNPH01000002
Actinomycetota
Micromonospora pattaloongensis [FNPH]
728086
728012
-
Gln
CTG
[ENA]
¡û
>W1710571778
FOWE01000007
Actinomycetota
Geodermatophilus obscurus [FOWE]
69170
69096
-
Gln
CTG
[ENA]
¡û
>W1710577741
FPBA01000009
Actinomycetota
Geodermatophilus amargosae [FPBA]
106240
106166
-
Gln
CTG
[ENA]
¡û
>W1710584891
FQVX01000003
Actinomycetota
Geodermatophilus nigrescens [FQVX]
1020450
1020524
+
Gln
CTG
[ENA]
¡û
>W1710592740
FRCS01000001
Actinomycetota
Cryptosporangium aurantiacum [FRCS]
293440
293512
+
Gln
CTG
[ENA]
¡û
>W1710597638
FTNI01000014
Actinomycetota
Microbispora rosea [FTNI]
162230
162302
+
Gln
CTG
[ENA]
¡û
>W1710767787
LIQR01000045
Actinomycetota
Peterkaempfera griseoplana griseoplanus [LIQR]
11356
11282
-
Gln
CTG
[ENA]
¡û
>W1710767791
LIQR01000045
Actinomycetota
Peterkaempfera griseoplana griseoplanus [LIQR]
10928
10854
-
Gln
CTG
[ENA]
¡û
Identical group No.772191 (2 seq.)
>WENV170574018
FLYL01067753
[FLYL] hot springs metagenome; Sediment
120
46
-
Gln
CTG
[ENA]
¢þ
>ENV09003006
ADGO01001415
Compost metagenome contig00001
426
352
-
Gln
CTG
[ENA]
¡û
Identical group No.772198 (1 seq.)
>ENV09003097
ADGO01004747
Compost metagenome contig00001
4416
4490
+
Gln
CTG
[ENA]
¡û
Identical group No.772235 (1 seq.)
>ENV09003546
ADGO01082961
Compost metagenome contig00001
389
317
-
Gln
CTG
[ENA]
¡û
Identical group No.780194 (3 seq.)
>W1710888412
LMZS01000109
Chloroflexota
Chloroflexi bacterium OLB15 [LMZS]
27403
27476
+
Gln
CTG
[ENA]
¡û
>ENV09003590
ADGO01096810
Compost metagenome contig00001
215
145
-
Gln
CTG
[ENA]
¡û
>W1610748790
LMZS01000109
Chloroflexota
Chloroflexi bacterium OLB15 [LMZS]
27403
27476
+
Gln
CTG
[ENA]
¡û
Identical group No.782532 (9 seq.)
>C018820
CP000686
Chloroflexota
Roseiflexus sp. RS-1 [CP000686]
2020620
2020547
-
Gln
CTG
[Ensembl]
¡û
>w019851
AAUM01000021
Chloroflexota
Roseiflexus castenholzii DSM 13941 [AAUM]
1965
1895
-
Gln
CTG
[ENA]
¡û
>WENV180014646
FQKF010078412
[FQKF] soil metagenome; Soil
108
35
-
Gln
CTG
[ENA]
¢þ
>C08008095
CP000804
Chloroflexota
Roseiflexus castenholzii DSM 13941 [CP000804]
3677058
3677131
+
Gln
CTG
[Ensembl]
¡û
>WENV170000778
AFSR01004233
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
527
454
-
Gln
CTG
[ENA]
¢þ
>WENV170574615
FLYN01001148
[FLYN] hot springs metagenome; Sediment
37704
37631
-
Gln
CTG
[ENA]
¢þ
>W09105837
AAQU01000002
Chloroflexota
Roseiflexus sp. RS-1 [AAQU]
231479
231552
+
Gln
CTG
[ENA]
¡û
>ENV09003484
ADGO01062509
Compost metagenome contig00001
187
260
+
Gln
CTG
[ENA]
¡û
>WENV11101121
AFSR01004233
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
527
454
-
Gln
CTG
[ENA]
¡û
Identical group No.784002 (20 seq.)
>W1710791406
LJNS01000015
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_30 [LJNS]
34635
34708
+
Gln
CTG
[ENA]
¡û
>WENV180027170
FTIX01000063
[FTIX] metagenome; soil
3917
3990
+
Gln
CTG
[ENA]
¢þ
>WENV180297325
OBJA01022179
[OBJA] soil metagenome; sediment, water from around vicinity
1360
1287
-
Gln
CTG
[ENA]
¢þ
>WENV181165086
OEIR01574358
[OEIR] soil metagenome; soil
122
195
+
Gln
CTG
[ENA]
¢þ
>WENV181166651
OEIU01000996
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
5382
5309
-
Gln
CTG
[ENA]
¢þ
>WENV181367265
OFPX01000567
[OFPX] freshwater metagenome; Freshwater Lake
193
266
+
Gln
CTG
[ENA]
¢þ
>WENV181369226
OFQO01012987
[OFQO] freshwater metagenome; Freshwater Lake
171
244
+
Gln
CTG
[ENA]
¢þ
>WENV183702688
PDVI01023407
[PDVI] alkali sediment metagenome; glacial lake sediment
76
3
-
Gln
CTG
[ENA]
¢þ
>WENV183702982
PDVJ01001296
[PDVJ] alkali sediment metagenome; glacial lake sediment
2022
1949
-
Gln
CTG
[ENA]
¢þ
>WENV183703514
PDVJ01019625
[PDVJ] alkali sediment metagenome; glacial lake sediment
1241
1314
+
Gln
CTG
[ENA]
¢þ
>WENV170646163
JQGG01004303
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
211
138
-
Gln
CTG
[ENA]
¢þ
>WENV170650056
JRYD01007688
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
402
329
-
Gln
CTG
[ENA]
¢þ
>WENV170662363
JXWW01046553
[JXWW] soil metagenome; rice field; organic GM Plot
518
591
+
Gln
CTG
[ENA]
¢þ
>WENV170706193
LNAP01001621
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
23002
22929
-
Gln
CTG
[ENA]
¢þ
>ENV09000125
ABSN01014781
Freshwater sediment metagenome lwFormaldehyde_C1
541
468
-
Gln
CTG
[ENA]
¡û
>ENV09003108
ADGO01005246
Compost metagenome contig00001
113
40
-
Gln
CTG
[ENA]
¡û
>ENV09003406
ADGO01032655
Compost metagenome contig00001
400
473
+
Gln
CTG
[ENA]
¡û
>W11178647
AGFD01000001
Gammaproteobacteria
Thiorhodospira sibirica ATCC 700588 [AGFD]
14111
14038
-
Gln
CTG
[ENA]
¡û
>C161038377
CP011971
Gammaproteobacteria
Steroidobacter denitrificans DSM 18526 [CP011971]
1349063
1349136
+
Gln
CTG
[Ensembl]
¡û
>W1610655331
LJNS01000015
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_30 [LJNS]
34635
34708
+
Gln
CTG
[ENA]
¡û
Identical group No.810683 (3 seq.)
>WENV180247260
OBEQ010010750
[OBEQ] groundwater metagenome; groundwater
3052
3125
+
Gln
CTG
[ENA]
¢þ
>WENV180636162
OCRE01073434
[OCRE] marine metagenome; Seawater
141
68
-
Gln
CTG
[ENA]
¢þ
>ENV09003753
ADGO01167514
Compost metagenome contig00001
274
201
-
Gln
CTG
[ENA]
¡û
Identical group No.834020 (1 seq.)
>ENV09003085
ADGO01004378
Compost metagenome contig00001
35
108
+
Gln
CTG
[ENA]
¡û
Identical group No.834024 (1 seq.)
>ENV09003176
ADGO01008877
Compost metagenome contig00001
124
51
-
Gln
CTG
[ENA]
¡û
Identical group No.834031 (1 seq.)
>ENV09003311
ADGO01018810
Compost metagenome contig00001
910
982
+
Gln
CTG
[ENA]
¡û
Identical group No.834043 (1 seq.)
>ENV09003607
ADGO01102744
Compost metagenome contig00001
169
242
+
Gln
CTG
[ENA]
¡û
Identical group No.834055 (1 seq.)
>ENV09003870
ADGO01200797
Compost metagenome contig00001
300
373
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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