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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Compost metagenome contig00001
Anticodon = GCG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.308158 (10 seq.)
>W1711188733
LWQS01000038
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
289167
289243
+
Arg
GCG
[ENA]
¡û
>WENV180013593
FMSI01108419
[FMSI] soil metagenome; Soil
327
251
-
Arg
GCG
[ENA]
¢þ
>WENV180014522
FQKF010032808
[FQKF] soil metagenome; Soil
327
251
-
Arg
GCG
[ENA]
¢þ
>WENV180037825
FVAA011803686
[FVAA] soil metagenome; Soil
1465
1541
+
Arg
GCG
[ENA]
¢þ
>WENV181410836
OGCI01007082
[OGCI] hot springs metagenome; Hot spring water
866
942
+
Arg
GCG
[ENA]
¢þ
>WENV181411346
OGCI01021800
[OGCI] hot springs metagenome; Hot spring water
1293
1369
+
Arg
GCG
[ENA]
¢þ
>WENV181414195
OGCL01000095
[OGCL] hot springs metagenome; Hot spring water
27727
27651
-
Arg
GCG
[ENA]
¢þ
>ENV09003739
ADGO01163221
Compost metagenome contig00001
210
134
-
Arg
GCG
[ENA]
¡û
>W11125653
ADVR01000011
Chloroflexota
Oscillochloris trichoides DG6 [ADVR]
59587
59663
+
Arg
GCG
[ENA]
¡û
>W1610990852
LWQS01000038
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
289167
289243
+
Arg
GCG
[ENA]
¡û
Identical group No.311550 (2 seq.)
>WENV181189542
OEOF01079303
[OEOF] activated sludge metagenome; Activated Sludge
275
199
-
Arg
GCG
[ENA]
¢þ
>ENV09003879
ADGO01201838
Compost metagenome contig00001
340
264
-
Arg
GCG
[ENA]
¡û
Identical group No.367666 (4 seq.)
>WENV180311691
OBJT01472578
[OBJT] soil metagenome; soil
92
16
-
Arg
GCG
[ENA]
¢þ
>WENV183705449
PDWI01001590
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
85764
85840
+
Arg
GCG
[ENA]
¢þ
>WENV183718277
PDWJ01003177
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
305
229
-
Arg
GCG
[ENA]
¢þ
>ENV09003153
ADGO01007174
Compost metagenome contig00001
1866
1790
-
Arg
GCG
[ENA]
¡û
Identical group No.772188 (1 seq.)
>ENV09002966
ADGO01000473
Compost metagenome contig00001
2
75
+
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK