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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Compost metagenome contig00001
Anticodon = GGA
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8070 (1 seq.)
>ENV09003813
ADGO01183144
Compost metagenome contig00001
40
134
+
Ser
GGA
[ENA]
¡û
Identical group No.25464 (2 seq.)
>ENV09003384
ADGO01028851
Compost metagenome contig00001
1175
1266
+
Ser
GGA
[ENA]
¡û
>C161038386
CP011971
Gammaproteobacteria
Steroidobacter denitrificans DSM 18526 [CP011971]
1978025
1978116
+
Ser
GGA
[Ensembl]
¡û
Identical group No.29699 (1 seq.)
>ENV09003351
ADGO01023419
Compost metagenome contig00001
34
125
+
Ser
GGA
[ENA]
¡û
Identical group No.29701 (1 seq.)
>ENV09003706
ADGO01143884
Compost metagenome contig00001
317
226
-
Ser
GGA
[ENA]
¡û
Identical group No.44768 (1 seq.)
>ENV09003341
ADGO01021900
Compost metagenome contig00001
166
76
-
Ser
GGA
[ENA]
¡û
Identical group No.44769 (1 seq.)
>ENV09003651
ADGO01120723
Compost metagenome contig00001
500
410
-
Ser
GGA
[ENA]
¡û
Identical group No.44772 (1 seq.)
>ENV09003758
ADGO01168825
Compost metagenome contig00001
96
186
+
Ser
GGA
[ENA]
¡û
Identical group No.71229 (1 seq.)
>ENV09002998
ADGO01000825
Compost metagenome contig00001
230
143
-
Ser
GGA
[ENA]
¡û
Identical group No.71230 (1 seq.)
>ENV09003009
ADGO01001421
Compost metagenome contig00001
2782
2871
+
Ser
GGA
[ENA]
¡û
Identical group No.71231 (1 seq.)
>ENV09003017
ADGO01001647
Compost metagenome contig00001
431
344
-
Ser
GGA
[ENA]
¡û
Identical group No.71232 (1 seq.)
>ENV09003083
ADGO01004168
Compost metagenome contig00001
438
527
+
Ser
GGA
[ENA]
¡û
Identical group No.71242 (1 seq.)
>ENV09003715
ADGO01152279
Compost metagenome contig00001
322
409
+
Ser
GGA
[ENA]
¡û
Identical group No.86016 (1 seq.)
>ENV09003560
ADGO01088299
Compost metagenome contig00001
196
284
+
Ser
GGA
[ENA]
¡û
Identical group No.86017 (1 seq.)
>ENV09003584
ADGO01095286
Compost metagenome contig00001
149
63
-
Ser
GGA
[ENA]
¡û
Identical group No.91641 (7 seq.)
>WENV180094464
MTBK01008403
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
3583
3496
-
Ser
GGA
[ENA]
¢þ
>WENV180291134
OBIV01011190
[OBIV] soil metagenome; Clay
203
289
+
Ser
GGA
[ENA]
¢þ
>WENV180343901
OBLK01136444
[OBLK] soil metagenome; Clay
328
240
-
Ser
GGA
[ENA]
¢þ
>WENV180690814
OCZS010026981
[OCZS] soil metagenome; soil
1694
1781
+
Ser
GGA
[ENA]
¢þ
>WENV181297967
OFHL01009665
[OFHL] soil metagenome; Clay
783
698
-
Ser
GGA
[ENA]
¢þ
>WENV170558529
CXWL01076538
[CXWL] groundwater metagenome; biofilm material
181
94
-
Ser
GGA
[ENA]
¢þ
>ENV09003700
ADGO01141109
Compost metagenome contig00001
117
32
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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