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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Compost metagenome contig00001
Anticodon = GGG
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240240 (1 seq.)
>ENV09003550
ADGO01084431
Compost metagenome contig00001
479
404
-
Pro
GGG
[ENA]
¡û
Identical group No.245063 (6 seq.)
>W1710893277
LNEO01000249
Unclassified
Deltaproteobacteria bacterium Ga0077539 [LNEO]
23349
23426
+
Pro
GGG
[ENA]
¡û
>WENV180693914
OCZS011750199
[OCZS] soil metagenome; soil
170
93
-
Pro
GGG
[ENA]
¢þ
>WENV183687617
ORMF011169205
[ORMF] groundwater metagenome; groundwater
503
427
-
Pro
GGG
[ENA]
¢þ
>WENV170710118
LNFM01001175
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
65666
65589
-
Pro
GGG
[ENA]
¢þ
>ENV09003648
ADGO01119606
Compost metagenome contig00001
68
142
+
Pro
GGG
[ENA]
¡û
>W1610753543
LNEO01000249
Unclassified
Deltaproteobacteria bacterium Ga0077539 [LNEO]
23349
23426
+
Pro
GGG
[ENA]
¡û
Identical group No.247228 (2 seq.)
>WENV170562764
CZCB01005164
[CZCB] anaerobic digester metagenome; anaerobic digester
13350
13273
-
Pro
GGG
[ENA]
¢þ
>ENV09003799
ADGO01179802
Compost metagenome contig00001
350
273
-
Pro
GGG
[ENA]
¡û
Identical group No.268747 (1 seq.)
>ENV09003866
ADGO01197683
Compost metagenome contig00001
96
21
-
Pro
GGG
[ENA]
¡û
Identical group No.309134 (9 seq.)
>WENV180291493
OBIV01068057
[OBIV] soil metagenome; Clay
188
261
+
Pro
GGG
[ENA]
¢þ
>WENV180343713
OBLK01066793
[OBLK] soil metagenome; Clay
356
283
-
Pro
GGG
[ENA]
¢þ
>WENV180690530
OCZS010009694
[OCZS] soil metagenome; soil
2645
2719
+
Pro
GGG
[ENA]
¢þ
>WENV181123087
OEFO01086805
[OEFO] soil metagenome; soil
173
99
-
Pro
GGG
[ENA]
¢þ
>WENV181164264
OEIR01085601
[OEIR] soil metagenome; soil
264
190
-
Pro
GGG
[ENA]
¢þ
>WENV181165767
OEIS01161456
[OEIS] soil metagenome; soil
104
178
+
Pro
GGG
[ENA]
¢þ
>WENV181298513
OFHL01124782
[OFHL] soil metagenome; Clay
224
151
-
Pro
GGG
[ENA]
¢þ
>WENV170652168
JRYG01159194
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
95
21
-
Pro
GGG
[ENA]
¢þ
>ENV09003206
ADGO01010412
Compost metagenome contig00001
218
292
+
Pro
GGG
[ENA]
¡û
Identical group No.309358 (5 seq.)
>WENV180250547
OBEQ010293982
[OBEQ] groundwater metagenome; groundwater
79
3
-
Pro
GGG
[ENA]
¢þ
>WENV180292669
OBIV01562040
[OBIV] soil metagenome; Clay
111
187
+
Pro
GGG
[ENA]
¢þ
>WENV181155607
OEID01284027
[OEID] soil metagenome; soil
185
109
-
Pro
GGG
[ENA]
¢þ
>WENV183724494
PJQE01022072
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
875
799
-
Pro
GGG
[ENA]
¢þ
>ENV09003019
ADGO01001736
Compost metagenome contig00001
2718
2642
-
Pro
GGG
[ENA]
¡û
Identical group No.310669 (9 seq.)
>WENV180695275
OCZS013255671
[OCZS] soil metagenome; soil
127
51
-
Pro
GGG
[ENA]
¢þ
>WENV181192163
OEPS010441235
[OEPS] soil metagenome; soil
111
35
-
Pro
GGG
[ENA]
¢þ
>WENV181221706
OFCW01002584
[OFCW] microbial mat metagenome; Microbial Mat
978
902
-
Pro
GGG
[ENA]
¢þ
>WENV181296032
OFHJ01004819
[OFHJ] soil metagenome; Clay
691
767
+
Pro
GGG
[ENA]
¢þ
>WENV181407191
OGCG01009581
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
1375
1451
+
Pro
GGG
[ENA]
¢þ
>W1810605143
QGNA01000003
Alphaproteobacteria
Falsiroseomonas bella CQN31 [QGNA]
384209
384133
-
Pro
GGG
[ENA]
¡û
>W1810692346
QLIX01000025
Alphaproteobacteria
Roseicella frigidaeris DB-1506 [QLIX]
31327
31251
-
Pro
GGG
[ENA]
¡û
>W1810700595
QMDI01000013
Alphaproteobacteria
Elioraea thermophila YIM 72297 [QMDI]
40794
40718
-
Pro
GGG
[ENA]
¡û
>ENV09003130
ADGO01006209
Compost metagenome contig00001
313
237
-
Pro
GGG
[ENA]
¡û
Identical group No.354107 (2 seq.)
>WENV180298181
OBJA01209673
[OBJA] soil metagenome; sediment, water from around vicinity
154
80
-
Pro
GGG
[ENA]
¢þ
>ENV09003573
ADGO01093309
Compost metagenome contig00001
86
10
-
Pro
GGG
[ENA]
¡û
Identical group No.359722 (7 seq.)
>WENV181145048
OEHO01173519
[OEHO] metagenome; unknown
137
61
-
Pro
GGG
[ENA]
¢þ
>WENV181155593
OEID01273929
[OEID] soil metagenome; soil
99
175
+
Pro
GGG
[ENA]
¢þ
>W1910640205
LSRW01000064
Gammaproteobacteria
Steroidobacter cummioxidans 35Y [LSRW]
33298
33222
-
Pro
GGG
[ENA]
¡û
>ENV09003404
ADGO01032481
Compost metagenome contig00001
682
606
-
Pro
GGG
[ENA]
¡û
>ENV09003531
ADGO01079240
Compost metagenome contig00001
894
970
+
Pro
GGG
[ENA]
¡û
>ENV09003548
ADGO01083235
Compost metagenome contig00001
196
272
+
Pro
GGG
[ENA]
¡û
>WENV077454
AAFX01041016
Soil microbial communities from Minnesota Farm
415
337
-
Pro
GGG
[ENA]
Identical group No.373244 (3 seq.)
>W1711573328
MNCZ01000033
Gammaproteobacteria
Gammaproteobacteria bacterium 13_2_20CM_66_19 [MNCZ]
12578
12654
+
Pro
GGG
[ENA]
¡û
>WENV180591913
OCOV01135823
[OCOV] marine metagenome; ENVO:01000301
277
353
+
Pro
GGG
[ENA]
¢þ
>ENV09003617
ADGO01106989
Compost metagenome contig00001
360
284
-
Pro
GGG
[ENA]
¡û
Identical group No.422021 (2 seq.)
>W1911189737
NQWI01000009
Chloroflexota
Candidatus Viridilinea mediisalina mediisalina Kir15-3F [NQWI]
62963
62887
-
Pro
GGG
[ENA]
¡û
>ENV09003417
ADGO01036684
Compost metagenome contig00001
1050
974
-
Pro
GGG
[ENA]
¡û
Identical group No.441316 (1 seq.)
>ENV09003025
ADGO01001863
Compost metagenome contig00001
101
27
-
Pro
GGG
[ENA]
¡û
Identical group No.441320 (1 seq.)
>ENV09003065
ADGO01003140
Compost metagenome contig00001
5393
5469
+
Pro
GGG
[ENA]
¡û
Identical group No.441336 (1 seq.)
>ENV09003181
ADGO01009163
Compost metagenome contig00001
176
252
+
Pro
GGG
[ENA]
¡û
Identical group No.441338 (1 seq.)
>ENV09003192
ADGO01009694
Compost metagenome contig00001
194
270
+
Pro
GGG
[ENA]
¡û
Identical group No.441405 (1 seq.)
>ENV09003826
ADGO01188012
Compost metagenome contig00001
502
426
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK