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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Compost metagenome contig00001
Anticodon = GTG
HIT:
26 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178475 (1 seq.)
>ENV09003847
ADGO01192446
Compost metagenome contig00001
334
419
+
His
GTG
[ENA]
¡û
Identical group No.242825 (2 seq.)
>WENV181167448
OEIU01029078
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
716
791
+
His
GTG
[ENA]
¢þ
>ENV09003486
ADGO01063729
Compost metagenome contig00001
316
393
+
His
GTG
[ENA]
¡û
Identical group No.275276 (91 seq.)
>W1710906776
LNOG01000005
Bacteroidota
Elizabethkingia anophelis [LNOG]
92810
92885
+
His
GTG
[ENA]
¡û
>W1710990876
LPXG01000022
Bacteroidota
Elizabethkingia anophelis [LPXG]
74262
74187
-
His
GTG
[ENA]
¡û
>W1711098003
LTJE01000048
Bacteroidota
Weeksella sp. HMSC059D05 [LTJE]
71
146
+
His
GTG
[ENA]
¡û
>W1711173944
LWDS01000012
Bacteroidota
Elizabethkingia anophelis [LWDS]
1157893
1157818
-
His
GTG
[ENA]
¡û
>W1711299175
MAFY01000018
Bacteroidota
Elizabethkingia anophelis [MAFY]
434412
434337
-
His
GTG
[ENA]
¡û
>W1711300402
MAGY01000014
Bacteroidota
Elizabethkingia anophelis endophytica [MAGY]
70142
70067
-
His
GTG
[ENA]
¡û
>W1711300476
MAHA01000001
Bacteroidota
Elizabethkingia anophelis [MAHA]
527336
527261
-
His
GTG
[ENA]
¡û
>W1711300768
MAHH01000001
Bacteroidota
Elizabethkingia anophelis [MAHH]
89626
89701
+
His
GTG
[ENA]
¡û
>W1711300865
MAHJ01000010
Bacteroidota
Elizabethkingia anophelis endophytica [MAHJ]
386462
386387
-
His
GTG
[ENA]
¡û
>W1711300961
MAHL01000011
Bacteroidota
Elizabethkingia anophelis endophytica [MAHL]
92523
92598
+
His
GTG
[ENA]
¡û
>W1711301002
MAHM01000009
Bacteroidota
Elizabethkingia anophelis [MAHM]
93042
93117
+
His
GTG
[ENA]
¡û
>W1711301047
MAHN01000032
Bacteroidota
Elizabethkingia anophelis R26 [MAHN]
158480
158405
-
His
GTG
[ENA]
¡û
>W1711301079
MAHO01000012
Bacteroidota
Elizabethkingia anophelis [MAHO]
92056
92131
+
His
GTG
[ENA]
¡û
>W1711301130
MAHP01000027
Bacteroidota
Elizabethkingia anophelis [MAHP]
91883
91958
+
His
GTG
[ENA]
¡û
>W1711301196
MAHR01000001
Bacteroidota
Elizabethkingia anophelis [MAHR]
59981
60056
+
His
GTG
[ENA]
¡û
>W1711301265
MAHS01000011
Bacteroidota
Elizabethkingia anophelis [MAHS]
92926
93001
+
His
GTG
[ENA]
¡û
>W1711301285
MAHT01000002
Bacteroidota
Elizabethkingia anophelis [MAHT]
93032
93107
+
His
GTG
[ENA]
¡û
>W1711301342
MAHU01000014
Bacteroidota
Elizabethkingia anophelis endophytica [MAHU]
91316
91391
+
His
GTG
[ENA]
¡û
>W1711503249
MKTK01000038
Bacteroidota
Chryseobacterium sp. 39-10 [MKTK]
105915
105990
+
His
GTG
[ENA]
¡û
>C171031040
CP014340
Bacteroidota
Elizabethkingia anophelis F3543 [CP014340]
1311878
1311953
+
His
GTG
-
¡û
>C171047939
CP016370
Bacteroidota
Elizabethkingia anophelis 0422 [CP016370]
1383574
1383499
-
His
GTG
-
¡û
>C171048074
CP016372
Bacteroidota
Elizabethkingia anophelis JM-87 [CP016372]
1127949
1127874
-
His
GTG
-
¡û
>C171048098
CP016373
Bacteroidota
Elizabethkingia anophelis 3375 [CP016373]
1946004
1946079
+
His
GTG
-
¡û
>C171048150
CP016374
Bacteroidota
Elizabethkingia anophelis F3201 [CP016374]
2033806
2033881
+
His
GTG
-
¡û
>W131061570
ANIW01000061
Bacteroidota
Elizabethkingia anophelis R26 [ANIW]
158548
158473
-
His
GTG
[ENA]
¡û
>W141074119
ASYE01000004
Bacteroidota
Elizabethkingia anophelis NUHP1 [ASYE]
330743
330668
-
His
GTG
[ENA]
¡û
>W141074180
ASYF01000010
Bacteroidota
Elizabethkingia anophelis NUHP2 [ASYF]
92061
92136
+
His
GTG
[ENA]
¡û
>W141074214
ASYG01000009
Bacteroidota
Elizabethkingia anophelis NUHP3 [ASYG]
92061
92136
+
His
GTG
[ENA]
¡û
>W141074239
ASYH01000001
Bacteroidota
Elizabethkingia anophelis NUH1 [ASYH]
563930
563855
-
His
GTG
[ENA]
¡û
>W141074299
ASYI01000005
Bacteroidota
Elizabethkingia anophelis NUH4 [ASYI]
77453
77528
+
His
GTG
[ENA]
¡û
>W141074327
ASYJ01000001
Bacteroidota
Elizabethkingia anophelis NUH6 [ASYJ]
171959
171884
-
His
GTG
[ENA]
¡û
>W141074384
ASYK01000008
Bacteroidota
Elizabethkingia anophelis NUH11 [ASYK]
172068
171993
-
His
GTG
[ENA]
¡û
>W141094500
AVCQ01000017
Bacteroidota
Elizabethkingia anophelis 502 [AVCQ]
197984
197909
-
His
GTG
[ENA]
¡û
>W141260395
CCAB010000144
Bacteroidota
Elizabethkingia anophelis [CCAB]
93663
93738
+
His
GTG
[ENA]
¡û
>W141260427
CCAC010000013
Bacteroidota
Elizabethkingia anophelis [CCAC]
93661
93736
+
His
GTG
[ENA]
¡û
>W141266244
CCMH01000009
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
215867
215942
+
His
GTG
[ENA]
¡û
>W141266245
CCMH01000009
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
215984
216059
+
His
GTG
[ENA]
¡û
>WENV183713952
PDWI01160373
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
358
284
-
His
GTG
[ENA]
¢þ
>WENV170720293
LSQX01147712
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
29016
29091
+
His
GTG
[ENA]
¢þ
>C181014351
CP014020
Bacteroidota
Elizabethkingia anophelis FDAARGOS_132 [CP014020]
655108
655034
-
His
GTG
-
¡û
>C181014398
CP014021
Bacteroidota
Elizabethkingia anophelis FDAARGOS_134 [CP014021]
1180084
1180010
-
His
GTG
-
¡û
>C181074875
CP023010
Bacteroidota
Elizabethkingia anophelis FDAARGOS_198 [CP023010]
893793
893867
+
His
GTG
-
¡û
>C181080617
CP023401
Bacteroidota
Elizabethkingia anophelis R26 [CP023401]
2844603
2844677
+
His
GTG
-
¡û
>C181080669
CP023402
Bacteroidota
Elizabethkingia anophelis Ag1 [CP023402]
2880102
2880176
+
His
GTG
-
¡û
>C181080721
CP023403
Bacteroidota
Elizabethkingia anophelis AR6-8 [CP023403]
2880102
2880176
+
His
GTG
-
¡û
>C181080773
CP023404
Bacteroidota
Elizabethkingia anophelis AR4-6 [CP023404]
2880102
2880176
+
His
GTG
-
¡û
>C191011118
CP014339
Bacteroidota
Elizabethkingia anophelis E6809 [CP014339]
1315116
1315190
+
His
GTG
-
¡û
>C191210725
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
399007
399081
+
His
GTG
-
¡û
>C191210726
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
399124
399198
+
His
GTG
-
¡û
>W141726901
JNCG01000011
Bacteroidota
Elizabethkingia anophelis meningoseptica [JNCG]
37793
37718
-
His
GTG
[ENA]
¡û
>W1910341257
FTPG01000001
Bacteroidota
Elizabethkingia anophelis LDVH-AR107 [FTPG]
33998
34072
+
His
GTG
[ENA]
¡û
>W1910342428
FTQY01000002
Bacteroidota
Elizabethkingia anophelis [FTQY]
490845
490771
-
His
GTG
[ENA]
¡û
>W1910342463
FTQZ01000001
Bacteroidota
Elizabethkingia anophelis [FTQZ]
418735
418661
-
His
GTG
[ENA]
¡û
>W1910342565
FTRB01000005
Bacteroidota
Elizabethkingia anophelis [FTRB]
240132
240058
-
His
GTG
[ENA]
¡û
>W1911397792
NWMH01000011
Bacteroidota
Elizabethkingia anophelis CSID_3000726811 [NWMH]
581414
581340
-
His
GTG
[ENA]
¡û
>W1911397805
NWMI01000001
Bacteroidota
Elizabethkingia anophelis CSID_3000726633 [NWMI]
93452
93526
+
His
GTG
[ENA]
¡û
>W1911397850
NWMM01000003
Bacteroidota
Elizabethkingia anophelis CSID_3000653323 [NWMM]
93452
93526
+
His
GTG
[ENA]
¡û
>W1911701212
QNUE01000008
Bacteroidota
Chryseobacterium flavum KCTC 12877 [QNUE]
61110
61036
-
His
GTG
[ENA]
¡û
>W1810171864
PJLZ01000002
Bacteroidota
Elizabethkingia anophelis OSUVM2 [PJLZ]
1203537
1203463
-
His
GTG
[ENA]
¡û
>W1810171889
PJMA01000001
Bacteroidota
Elizabethkingia anophelis OSUVM1 [PJMA]
204797
204871
+
His
GTG
[ENA]
¡û
>W1810378754
PXJH01000009
Bacteroidota
Elizabethkingia anophelis SP4182 [PXJH]
84985
84911
-
His
GTG
[ENA]
¡û
>W1810722234
QNTY01000004
Bacteroidota
Elizabethkingia anophelis 40313151 [QNTY]
1129802
1129728
-
His
GTG
[ENA]
¡û
>W1810722288
QNTZ01000007
Bacteroidota
Elizabethkingia anophelis 6499925 [QNTZ]
432043
431969
-
His
GTG
[ENA]
¡û
>C151009348
CP006576
Bacteroidota
Elizabethkingia anophelis FMS-007 [CP006576]
92717
92792
+
His
GTG
[Ensembl]
¡û
>C151027569
CP007547
Bacteroidota
Elizabethkingia anophelis NUHP1 [CP007547]
314753
314828
+
His
GTG
[Ensembl]
¡û
>ENV09003143
ADGO01006732
Compost metagenome contig00001
83
159
+
His
GTG
[ENA]
¡û
>W1511360389
JSAA01000089
Bacteroidota
Elizabethkingia anophelis Endophthalmitis [JSAA]
64211
64136
-
His
GTG
[ENA]
¡û
>C11123833
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
435108
435033
-
His
GTG
[Ensembl]
¡û
>C11123834
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
434991
434916
-
His
GTG
[Ensembl]
¡û
>W1511683336
LFKT01000011
Bacteroidota
Elizabethkingia anophelis As1 [LFKT]
393843
393918
+
His
GTG
[ENA]
¡û
>C161077902
CP014805
Bacteroidota
Elizabethkingia anophelis CSID_3015183678 [CP014805]
3299495
3299570
+
His
GTG
-
¡û
>C161082458
CP015066
Bacteroidota
Elizabethkingia anophelis CSID_3015183684 [CP015066]
3299495
3299570
+
His
GTG
-
¡û
>C161082510
CP015067
Bacteroidota
Elizabethkingia anophelis CSID_3000521207 [CP015067]
3297980
3298055
+
His
GTG
-
¡û
>C161082562
CP015068
Bacteroidota
Elizabethkingia anophelis CSID_3015183681 [CP015068]
3299495
3299570
+
His
GTG
-
¡û
>W1610083472
CBYD010000022
Bacteroidota
Elizabethkingia anophelis PW2806 [CBYD]
91112
91187
+
His
GTG
[ENA]
¡û
>W1610083493
CBYE010000013
Bacteroidota
Elizabethkingia anophelis PW2809 [CBYE]
89475
89550
+
His
GTG
[ENA]
¡û
>W1610083523
CBYF010000024
Bacteroidota
Elizabethkingia anophelis [CBYF]
93101
93176
+
His
GTG
[ENA]
¡û
>W121032010
AHHG01000004
Bacteroidota
Elizabethkingia anophelis Ag1 [AHHG]
89386
89461
+
His
GTG
[ENA]
¡û
>W1610503131
FLMR01000007
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
59424
59499
+
His
GTG
[ENA]
¡û
>W1610503132
FLMR01000007
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
59541
59615
+
His
GTG
[ENA]
¡û
>W1610507343
FLST01000024
Bacteroidota
Elizabethkingia anophelis [FLST]
158589
158514
-
His
GTG
[ENA]
¡û
>W1610507388
FLSU01000026
Bacteroidota
Elizabethkingia anophelis endophytica [FLSU]
70248
70173
-
His
GTG
[ENA]
¡û
>W1610765790
LNOG01000005
Bacteroidota
Elizabethkingia anophelis [LNOG]
92810
92885
+
His
GTG
[ENA]
¡û
>W1610845548
LPXG01000022
Bacteroidota
Elizabethkingia anophelis [LPXG]
74262
74187
-
His
GTG
[ENA]
¡û
>W1710088489
CBYD010000022
Bacteroidota
Elizabethkingia anophelis PW2806 [CBYD]
91112
91187
+
His
GTG
[ENA]
¡û
>W1710088510
CBYE010000013
Bacteroidota
Elizabethkingia anophelis PW2809 [CBYE]
89475
89550
+
His
GTG
[ENA]
¡û
>W1710088540
CBYF010000024
Bacteroidota
Elizabethkingia anophelis [CBYF]
93101
93176
+
His
GTG
[ENA]
¡û
>W1710496365
FLMR01000007
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
59424
59499
+
His
GTG
[ENA]
¡û
>W1710496366
FLMR01000007
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
59541
59615
+
His
GTG
[ENA]
¡û
>W1710499561
FLST01000024
Bacteroidota
Elizabethkingia anophelis [FLST]
158589
158514
-
His
GTG
[ENA]
¡û
>W1710499606
FLSU01000026
Bacteroidota
Elizabethkingia anophelis endophytica [FLSU]
70248
70173
-
His
GTG
[ENA]
¡û
Identical group No.308289 (2 seq.)
>WENV180015281
FQKF010497165
[FQKF] soil metagenome; Soil
320
245
-
His
GTG
[ENA]
¢þ
>ENV09003733
ADGO01161877
Compost metagenome contig00001
305
231
-
His
GTG
[ENA]
¡û
Identical group No.441312 (1 seq.)
>ENV09003005
ADGO01001348
Compost metagenome contig00001
1548
1622
+
His
GTG
[ENA]
¡û
Identical group No.441325 (1 seq.)
>ENV09003098
ADGO01004802
Compost metagenome contig00001
378
454
+
His
GTG
[ENA]
¡û
Identical group No.441331 (1 seq.)
>ENV09003157
ADGO01007385
Compost metagenome contig00001
338
414
+
His
GTG
[ENA]
¡û
Identical group No.441341 (1 seq.)
>ENV09003208
ADGO01010775
Compost metagenome contig00001
1124
1048
-
His
GTG
[ENA]
¡û
Identical group No.441350 (1 seq.)
>ENV09003365
ADGO01024765
Compost metagenome contig00001
463
387
-
His
GTG
[ENA]
¡û
Identical group No.441360 (1 seq.)
>ENV09003467
ADGO01051445
Compost metagenome contig00001
374
450
+
His
GTG
[ENA]
¡û
Identical group No.441371 (1 seq.)
>ENV09003580
ADGO01095225
Compost metagenome contig00001
130
205
+
His
GTG
[ENA]
¡û
Identical group No.441390 (1 seq.)
>ENV09003707
ADGO01144549
Compost metagenome contig00001
40
116
+
His
GTG
[ENA]
¡û
Identical group No.441420 (1 seq.)
>ENV09003921
ADGO01216247
Compost metagenome contig00001
94
18
-
His
GTG
[ENA]
¡û
Identical group No.591729 (3 seq.)
>WENV180352583
OBLQ010296863
[OBLQ] soil metagenome; soil
126
51
-
His
GTG
[ENA]
¢þ
>WENV170004247
AGTN01616010
[AGTN] bioreactor metagenome; poplar biomass
130
55
-
His
GTG
[ENA]
¢þ
>ENV09003319
ADGO01019824
Compost metagenome contig00001
328
253
-
His
GTG
[ENA]
¡û
Identical group No.602591 (2 seq.)
>W1810665783
QJOD01000001
Gammaproteobacteria
Salinisphaera halophila KSM-18 [QJOD]
1200995
1200920
-
His
GTG
[ENA]
¡û
>ENV09003520
ADGO01078771
Compost metagenome contig00001
117
192
+
His
GTG
[ENA]
¡û
Identical group No.641721 (1 seq.)
>ENV09002971
ADGO01000473
Compost metagenome contig00001
615
689
+
His
GTG
[ENA]
¡û
Identical group No.641731 (1 seq.)
>ENV09003021
ADGO01001743
Compost metagenome contig00001
315
241
-
His
GTG
[ENA]
¡û
Identical group No.641752 (1 seq.)
>ENV09003273
ADGO01015407
Compost metagenome contig00001
206
281
+
His
GTG
[ENA]
¡û
Identical group No.641779 (1 seq.)
>ENV09003461
ADGO01047693
Compost metagenome contig00001
167
93
-
His
GTG
[ENA]
¡û
Identical group No.641799 (1 seq.)
>ENV09003576
ADGO01094360
Compost metagenome contig00001
352
275
-
His
GTG
[ENA]
¡û
Identical group No.641809 (1 seq.)
>ENV09003621
ADGO01108536
Compost metagenome contig00001
188
261
+
His
GTG
[ENA]
¡û
Identical group No.641855 (1 seq.)
>ENV09003849
ADGO01192476
Compost metagenome contig00001
42
117
+
His
GTG
[ENA]
¡û
Identical group No.641862 (1 seq.)
>ENV09003898
ADGO01208070
Compost metagenome contig00001
179
106
-
His
GTG
[ENA]
¡û
Identical group No.676022 (13 seq.)
>W1711188739
LWQS01000042
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
50005
49931
-
His
GTG
[ENA]
¡û
>w019647
AAUI01000075
Chloroflexota
Chloroflexus aggregans DSM 9485 [AAUI]
8414
8490
+
His
GTG
[ENA]
¡û
>WENV180013271
FMSI01062082
[FMSI] soil metagenome; Soil
3027
2953
-
His
GTG
[ENA]
¢þ
>WENV180015007
FQKF010267725
[FQKF] soil metagenome; Soil
897
823
-
His
GTG
[ENA]
¢þ
>WENV180037210
FVAA010733435
[FVAA] soil metagenome; Soil
357
431
+
His
GTG
[ENA]
¢þ
>WENV181411347
OGCI01021816
[OGCI] hot springs metagenome; Hot spring water
1201
1275
+
His
GTG
[ENA]
¢þ
>W141220487
AZXV01000004
Chloroflexota
Chloroflexus sp. Y-396-1 [AZXV]
1237631
1237557
-
His
GTG
[ENA]
¡û
>WENV170000929
AFSR01008322
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
743
817
+
His
GTG
[ENA]
¢þ
>W141804731
JPIM01000101
Chloroflexota
Chloroflexus sp. MS-G [JPIM]
6866
6940
+
His
GTG
[ENA]
¡û
>C09102672
CP001337
Chloroflexota
Chloroflexus aggregans DSM 9485 [CP001337]
615865
615939
+
His
GTG
[Ensembl]
¡û
>ENV09003373
ADGO01026920
Compost metagenome contig00001
6
80
+
His
GTG
[ENA]
¡û
>WENV11101272
AFSR01008322
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
743
817
+
His
GTG
[ENA]
¡û
>W1610990858
LWQS01000042
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
50005
49931
-
His
GTG
[ENA]
¡û
Identical group No.772238 (1 seq.)
>ENV09003604
ADGO01101051
Compost metagenome contig00001
220
294
+
His
GTG
[ENA]
¡û
Identical group No.772243 (1 seq.)
>ENV09003732
ADGO01161739
Compost metagenome contig00001
121
195
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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