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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Compost metagenome contig00001
Anticodon = TAA
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.71246 (1 seq.)
>ENV09003894
ADGO01205714
Compost metagenome contig00001
89
2
-
Leu
TAA
[ENA]
¡û
Identical group No.86010 (1 seq.)
>ENV09003051
ADGO01002517
Compost metagenome contig00001
5065
4977
-
Leu
TAA
[ENA]
¡û
Identical group No.86014 (1 seq.)
>ENV09003515
ADGO01078200
Compost metagenome contig00001
27
115
+
Leu
TAA
[ENA]
¡û
Identical group No.86020 (1 seq.)
>ENV09003702
ADGO01141324
Compost metagenome contig00001
88
2
-
Leu
TAA
[ENA]
¡û
Identical group No.86021 (1 seq.)
>ENV09003728
ADGO01158149
Compost metagenome contig00001
181
93
-
Leu
TAA
[ENA]
¡û
Identical group No.86024 (1 seq.)
>ENV09003926
ADGO01217603
Compost metagenome contig00001
89
2
-
Leu
TAA
[ENA]
¡û
Identical group No.110822 (1 seq.)
>ENV09003140
ADGO01006713
Compost metagenome contig00001
264
177
-
Leu
TAA
[ENA]
¡û
Identical group No.110830 (1 seq.)
>ENV09003775
ADGO01171644
Compost metagenome contig00001
267
354
+
Leu
TAA
[ENA]
¡û
Identical group No.110831 (1 seq.)
>ENV09003784
ADGO01174660
Compost metagenome contig00001
5
89
+
Leu
TAA
[ENA]
¡û
Identical group No.151369 (1 seq.)
>ENV09003178
ADGO01009090
Compost metagenome contig00001
132
215
+
Leu
TAA
[ENA]
¡û
Identical group No.151382 (1 seq.)
>ENV09003589
ADGO01096337
Compost metagenome contig00001
108
194
+
Leu
TAA
[ENA]
¡û
Identical group No.178463 (1 seq.)
>ENV09003191
ADGO01009613
Compost metagenome contig00001
146
228
+
Leu
TAA
[ENA]
¡û
Identical group No.215877 (1 seq.)
>ENV09003008
ADGO01001416
Compost metagenome contig00001
313
397
+
Leu
TAA
[ENA]
¡û
Identical group No.215878 (1 seq.)
>ENV09003023
ADGO01001805
Compost metagenome contig00001
2233
2149
-
Leu
TAA
[ENA]
¡û
Identical group No.232226 (1 seq.)
>ENV09002965
ADGO01000472
Compost metagenome contig00001
289
210
-
Leu
TAA
[ENA]
¡û
Identical group No.417335 (4 seq.)
>W131044935
AMRA01000095
Actinomycetota
Mycolicibacterium hassiacum DSM 44199 [AMRA]
115573
115497
-
Leu
TAA
[ENA]
¡û
>W131165703
ARBU01000007
Actinomycetota
Mycolicibacterium hassiacum DSM 44199 [ARBU]
74541
74617
+
Leu
TAA
[ENA]
¡û
>C191189846
LR026975
Actinomycetota
Mycolicibacterium hassiacum DSM 44199 [LR026975]
3466541
3466466
-
Leu
TAA
-
¡û
>ENV09003623
ADGO01108606
Compost metagenome contig00001
200
276
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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