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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Compost metagenome contig00001
Anticodon = TCG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309097 (3 seq.)
>WENV180291286
OBIV01032420
[OBIV] soil metagenome; Clay
485
409
-
Arg
TCG
[ENA]
¢þ
>WENV170650041
JRYD01006258
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
7071
6995
-
Arg
TCG
[ENA]
¢þ
>ENV09003522
ADGO01078993
Compost metagenome contig00001
439
363
-
Arg
TCG
[ENA]
¡û
Identical group No.387320 (3 seq.)
>WENV170356467
CETJ01034651
[CETJ] marine metagenome genome assembly TARA_122_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
195
119
-
Arg
TCG
[ENA]
¢þ
>WENV170366014
CETO01023585
[CETO] marine metagenome genome assembly TARA_122_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
236
160
-
Arg
TCG
[ENA]
¢þ
>ENV09003306
ADGO01018215
Compost metagenome contig00001
114
190
+
Arg
TCG
[ENA]
¡û
Identical group No.441319 (2 seq.)
>W1910720067
MGCQ01000009
Unclassified
Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_41_12 [MGCQ]
144365
144441
+
Arg
TCG
[ENA]
¡û
>ENV09003055
ADGO01002632
Compost metagenome contig00001
3422
3498
+
Arg
TCG
[ENA]
¡û
Identical group No.441354 (1 seq.)
>ENV09003421
ADGO01037499
Compost metagenome contig00001
472
396
-
Arg
TCG
[ENA]
¡û
Identical group No.441385 (1 seq.)
>ENV09003675
ADGO01131374
Compost metagenome contig00001
303
227
-
Arg
TCG
[ENA]
¡û
Identical group No.641800 (1 seq.)
>ENV09003577
ADGO01094360
Compost metagenome contig00001
182
107
-
Arg
TCG
[ENA]
¡û
Identical group No.641833 (1 seq.)
>ENV09003736
ADGO01162946
Compost metagenome contig00001
17
92
+
Arg
TCG
[ENA]
¡û
Identical group No.641851 (1 seq.)
>ENV09003821
ADGO01186997
Compost metagenome contig00001
226
151
-
Arg
TCG
[ENA]
¡û
Identical group No.702380 (8 seq.)
>WENV180019674
FTCG01000156
[FTCG] metagenome; soil
4545
4472
-
Arg
TCG
[ENA]
¢þ
>WENV180021439
FTEL01007598
[FTEL] metagenome; soil
1502
1575
+
Arg
TCG
[ENA]
¢þ
>WENV180027633
FTIZ01013076
[FTIZ] metagenome; soil
1950
1877
-
Arg
TCG
[ENA]
¢þ
>WENV180027909
FTIZ01248734
[FTIZ] metagenome; soil
480
407
-
Arg
TCG
[ENA]
¢þ
>WENV183697421
OUNJ010746572
[OUNJ] metagenome; soil
78
151
+
Arg
TCG
[ENA]
¢þ
>WENV170565659
FJWA01005925
[FJWA] metagenome; soil
598
671
+
Arg
TCG
[ENA]
¢þ
>WENV170565682
FJWA01008140
[FJWA] metagenome; soil
1230
1157
-
Arg
TCG
[ENA]
¢þ
>ENV09003726
ADGO01158087
Compost metagenome contig00001
341
270
-
Arg
TCG
[ENA]
¡û
Identical group No.772190 (1 seq.)
>ENV09002976
ADGO01000473
Compost metagenome contig00001
1304
1375
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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