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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Compost metagenome contig00001
Anticodon = TCT
HIT:
22 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.336704 (5 seq.)
>W1910004411
AVCZ01000007
Bacillota
Ureibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529 [AVCZ]
25310
25235
-
Arg
TCT
[ENA]
¡û
>W1911495147
OBMQ01000003
Bacillota
Ureibacillus xyleni JC22 [OBMQ]
122502
122427
-
Arg
TCT
[ENA]
¡û
>W1911495513
OBQC01000002
Bacillota
Ureibacillus acetophenoni JC23 [OBQC]
380331
380256
-
Arg
TCT
[ENA]
¡û
>ENV09003454
ADGO01046000
Compost metagenome contig00001
167
91
-
Arg
TCT
[ENA]
¡û
>W1511316159
JPVQ01000007
Bacillota
Ureibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529 [JPVQ]
25310
25235
-
Arg
TCT
[ENA]
¡û
Identical group No.378668 (7 seq.)
>WENV183729209
PJTQ01011369
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1049
975
-
Arg
TCT
[ENA]
¢þ
>WENV183734611
PJTZ01024981
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
44
118
+
Arg
TCT
[ENA]
¢þ
>WENV183737813
PJUD01036001
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
607
533
-
Arg
TCT
[ENA]
¢þ
>WENV183740820
PJUF01011885
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1438
1512
+
Arg
TCT
[ENA]
¢þ
>WENV183741057
PJUF01032540
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
403
477
+
Arg
TCT
[ENA]
¢þ
>W1810692616
QLKR01000001
Bacteroidota
Niabella yanshanensis HAMBI_3031 [QLKR]
876889
876815
-
Arg
TCT
[ENA]
¡û
>ENV09003498
ADGO01067981
Compost metagenome contig00001
273
349
+
Arg
TCT
[ENA]
¡û
Identical group No.396938 (2 seq.)
>WENV170003184
AGTN01252191
[AGTN] bioreactor metagenome; poplar biomass
268
341
+
Arg
TCT
[ENA]
¢þ
>ENV09003318
ADGO01019824
Compost metagenome contig00001
429
353
-
Arg
TCT
[ENA]
¡û
Identical group No.407270 (7 seq.)
>W1710882258
LMTR01000083
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
40016
40092
+
Arg
TCT
[ENA]
¡û
>WENV180690081
OCZB010521190
[OCZB] metagenome; Oyster Gut Contents
9
85
+
Arg
TCT
[ENA]
¢þ
>WENV170652330
JRYH01000935
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
25815
25739
-
Arg
TCT
[ENA]
¢þ
>WENV170655591
JTFN01049001
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
299
375
+
Arg
TCT
[ENA]
¢þ
>WENV170655619
JTFN01053096
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
300
376
+
Arg
TCT
[ENA]
¢þ
>ENV09003456
ADGO01046257
Compost metagenome contig00001
297
221
-
Arg
TCT
[ENA]
¡û
>W1610744184
LMTR01000083
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
40016
40092
+
Arg
TCT
[ENA]
¡û
Identical group No.441315 (1 seq.)
>ENV09003015
ADGO01001491
Compost metagenome contig00001
306
380
+
Arg
TCT
[ENA]
¡û
Identical group No.441317 (1 seq.)
>ENV09003053
ADGO01002630
Compost metagenome contig00001
309
233
-
Arg
TCT
[ENA]
¡û
Identical group No.441343 (1 seq.)
>ENV09003266
ADGO01014471
Compost metagenome contig00001
746
672
-
Arg
TCT
[ENA]
¡û
Identical group No.441344 (1 seq.)
>ENV09003272
ADGO01015407
Compost metagenome contig00001
101
177
+
Arg
TCT
[ENA]
¡û
Identical group No.441345 (1 seq.)
>ENV09003276
ADGO01015410
Compost metagenome contig00001
73
-1
-
Arg
TCT
[ENA]
¡û
Identical group No.441353 (1 seq.)
>ENV09003420
ADGO01037442
Compost metagenome contig00001
59
135
+
Arg
TCT
[ENA]
¡û
Identical group No.441364 (1 seq.)
>ENV09003519
ADGO01078771
Compost metagenome contig00001
1
77
+
Arg
TCT
[ENA]
¡û
Identical group No.441375 (1 seq.)
>ENV09003614
ADGO01106044
Compost metagenome contig00001
270
197
-
Arg
TCT
[ENA]
¡û
Identical group No.441389 (1 seq.)
>ENV09003699
ADGO01140992
Compost metagenome contig00001
253
177
-
Arg
TCT
[ENA]
¡û
Identical group No.441398 (2 seq.)
>ENV09003782
ADGO01173081
Compost metagenome contig00001
25
101
+
Arg
TCT
[ENA]
¡û
>ENV09003864
ADGO01197171
Compost metagenome contig00001
25
101
+
Arg
TCT
[ENA]
¡û
Identical group No.441410 (1 seq.)
>ENV09003874
ADGO01201148
Compost metagenome contig00001
224
150
-
Arg
TCT
[ENA]
¡û
Identical group No.641734 (1 seq.)
>ENV09003075
ADGO01003595
Compost metagenome contig00001
42
117
+
Arg
TCT
[ENA]
¡û
Identical group No.641751 (1 seq.)
>ENV09003260
ADGO01014033
Compost metagenome contig00001
407
334
-
Arg
TCT
[ENA]
¡û
Identical group No.641763 (2 seq.)
>ENV09003374
ADGO01027072
Compost metagenome contig00001
451
376
-
Arg
TCT
[ENA]
¡û
>ENV09003375
ADGO01027073
Compost metagenome contig00001
695
620
-
Arg
TCT
[ENA]
¡û
Identical group No.641844 (1 seq.)
>ENV09003794
ADGO01178490
Compost metagenome contig00001
403
478
+
Arg
TCT
[ENA]
¡û
Identical group No.641847 (1 seq.)
>ENV09003812
ADGO01182699
Compost metagenome contig00001
125
200
+
Arg
TCT
[ENA]
¡û
Identical group No.641861 (1 seq.)
>ENV09003892
ADGO01204827
Compost metagenome contig00001
138
213
+
Arg
TCT
[ENA]
¡û
Identical group No.641863 (1 seq.)
>ENV09003917
ADGO01212896
Compost metagenome contig00001
83
8
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK