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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Compost metagenome contig00001
Anticodon = TGG
HIT:
22 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243173 (48 seq.)
>W1711713331
MTCZ01000007
Bacteroidota
Flavobacterium davisii columnare [MTCZ]
17660
17737
+
Pro
TGG
[ENA]
¡û
>W1711713381
MTCZ01000346
Bacteroidota
Flavobacterium davisii columnare [MTCZ]
323
400
+
Pro
TGG
[ENA]
¡û
>W131224655
AUCZ01000002
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
29757
29834
+
Pro
TGG
[ENA]
¡û
>W131224678
AUCZ01000006
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
177734
177657
-
Pro
TGG
[ENA]
¡û
>WENV180035796
FTLB01010547
[FTLB] metagenome; soil
7875
7800
-
Pro
TGG
[ENA]
¢þ
>WENV180296813
OBJA01003073
[OBJA] soil metagenome; sediment, water from around vicinity
292
217
-
Pro
TGG
[ENA]
¢þ
>WENV180833743
ODKD01000165
[ODKD] human metagenome; G_DNA_Supragingival plaque
493
418
-
Pro
TGG
[ENA]
¢þ
>WENV181007615
ODWE01000298
[ODWE] human metagenome; G_DNA_Supragingival plaque
257
182
-
Pro
TGG
[ENA]
¢þ
>WENV181051260
ODYD01299396
[ODYD] human metagenome; G_DNA_Supragingival plaque
57
132
+
Pro
TGG
[ENA]
¢þ
>WENV181070435
OEAE01001533
[OEAE] human metagenome; G_DNA_Supragingival plaque
489
414
-
Pro
TGG
[ENA]
¢þ
>WENV181178629
OEJT01000098
[OEJT] human metagenome; G_DNA_Supragingival plaque
79
4
-
Pro
TGG
[ENA]
¢þ
>WENV181838593
OGVN01004905
[OGVN] freshwater metagenome; freshwater
732
657
-
Pro
TGG
[ENA]
¢þ
>WENV181844663
OGVW01016678
[OGVW] freshwater metagenome; freshwater
606
681
+
Pro
TGG
[ENA]
¢þ
>WENV183092227
OLKW01000274
[OLKW] soil metagenome; soil
18205
18280
+
Pro
TGG
[ENA]
¢þ
>WENV183729771
PJTR01000068
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
120505
120430
-
Pro
TGG
[ENA]
¢þ
>WENV183731091
PJTS01008660
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
624
549
-
Pro
TGG
[ENA]
¢þ
>C191134768
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1390816
1390891
+
Pro
TGG
-
¡û
>C191134770
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1391040
1391115
+
Pro
TGG
-
¡û
>C191210761
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
1227822
1227747
-
Pro
TGG
-
¡û
>C191210764
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
1227519
1227444
-
Pro
TGG
-
¡û
>C141012313
HE774682
Bacteroidota
Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682]
1370953
1371030
+
Pro
TGG
-
¡û
>C141012318
HE774682
Bacteroidota
Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682]
2094080
2094157
+
Pro
TGG
-
¡û
>W1910577997
JUIX01000006
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
84295
84220
-
Pro
TGG
[ENA]
¡û
>W1910577998
JUIX01000006
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
84188
84113
-
Pro
TGG
[ENA]
¡û
>W1910578022
JUIX01000029
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
13469
13394
-
Pro
TGG
[ENA]
¡û
>W1911533989
OLKH01000086
Bacteroidota
Flavobacterium columnare [OLKH]
1254
1179
-
Pro
TGG
[ENA]
¡û
>W1911533992
OLKH01000086
Bacteroidota
Flavobacterium columnare [OLKH]
929
854
-
Pro
TGG
[ENA]
¡û
>W1911534010
OLKH01000102
Bacteroidota
Flavobacterium columnare [OLKH]
13236
13161
-
Pro
TGG
[ENA]
¡û
>C151013068
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
325325
325248
-
Pro
TGG
[Ensembl]
¡û
>C151013070
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
325098
325021
-
Pro
TGG
[Ensembl]
¡û
>ENV09003052
ADGO01002594
Compost metagenome contig00001
243
166
-
Pro
TGG
[ENA]
¡û
>C11123809
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
1880576
1880651
+
Pro
TGG
[Ensembl]
¡û
>C121010297
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
319081
319004
-
Pro
TGG
[Ensembl]
¡û
>C121010299
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
318854
318777
-
Pro
TGG
[Ensembl]
¡û
>W1610029719
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
260404
260327
-
Pro
TGG
[ENA]
¡û
>W1610029721
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
260177
260100
-
Pro
TGG
[ENA]
¡û
>W1610535004
JRLV01000001
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
255055
254978
-
Pro
TGG
[ENA]
¡û
>W1610535015
JRLV01000009
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
106673
106596
-
Pro
TGG
[ENA]
¡û
>W1610535043
JRLW01000003
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
197967
198044
+
Pro
TGG
[ENA]
¡û
>W1610535048
JRLW01000004
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
102246
102323
+
Pro
TGG
[ENA]
¡û
>W1710027089
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
260404
260327
-
Pro
TGG
[ENA]
¡û
>W1710027091
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
260177
260100
-
Pro
TGG
[ENA]
¡û
>W1710507348
FMVF01000002
Bacteroidota
Flavobacterium caeni [FMVF]
96
19
-
Pro
TGG
[ENA]
¡û
>W1710507378
FMVF01000015
Bacteroidota
Flavobacterium caeni [FMVF]
96
19
-
Pro
TGG
[ENA]
¡û
>W1710637240
JRLV01000001
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
255055
254978
-
Pro
TGG
[ENA]
¡û
>W1710637251
JRLV01000009
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
106673
106596
-
Pro
TGG
[ENA]
¡û
>W1710637279
JRLW01000003
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
197967
198044
+
Pro
TGG
[ENA]
¡û
>W1710637284
JRLW01000004
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
102246
102323
+
Pro
TGG
[ENA]
¡û
Identical group No.268740 (1 seq.)
>ENV09003407
ADGO01033028
Compost metagenome contig00001
170
247
+
Pro
TGG
[ENA]
¡û
Identical group No.283623 (14 seq.)
>WENV180017714
FSXN01001073
[FSXN] metagenome; soil
3735
3811
+
Pro
TGG
[ENA]
¢þ
>WENV180018703
FTAG01002111
[FTAG] metagenome; soil
2556
2632
+
Pro
TGG
[ENA]
¢þ
>WENV180022166
FTFS01000812
[FTFS] metagenome; soil
1020
944
-
Pro
TGG
[ENA]
¢þ
>WENV180022685
FTGO01000415
[FTGO] metagenome; soil
25
101
+
Pro
TGG
[ENA]
¢þ
>WENV180024661
FTII01139067
[FTII] metagenome; soil
5
81
+
Pro
TGG
[ENA]
¢þ
>WENV180028143
FTJA01000049
[FTJA] metagenome; soil
2
78
+
Pro
TGG
[ENA]
¢þ
>WENV180028192
FTJA01002742
[FTJA] metagenome; soil
2111
2187
+
Pro
TGG
[ENA]
¢þ
>WENV180031972
FTJU01002218
[FTJU] metagenome; soil
27562
27486
-
Pro
TGG
[ENA]
¢þ
>WENV180035437
FTKZ01000751
[FTKZ] metagenome; soil
1998
1922
-
Pro
TGG
[ENA]
¢þ
>W141230451
BATC01000002
Alphaproteobacteria
Brevundimonas abyssalis TAR-001 [BATC]
49037
49113
+
Pro
TGG
[ENA]
¡û
>W1911738155
QUOQ01000003
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
104237
104161
-
Pro
TGG
[ENA]
¡û
>W1810000945
BEWU01000003
Alphaproteobacteria
Brevundimonas denitrificans TAR-002 [BEWU]
11415
11491
+
Pro
TGG
[ENA]
¡û
>ENV09003475
ADGO01059801
Compost metagenome contig00001
415
339
-
Pro
TGG
[ENA]
¡û
>W1710601585
FUXL01000001
Alphaproteobacteria
Consotaella salsifontis USBA 369 [FUXL]
84091
84167
+
Pro
TGG
[ENA]
¡û
Identical group No.284349 (12 seq.)
>WENV180086192
MPMD02434438
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
19992
20068
+
Pro
TGG
[ENA]
¢þ
>WENV180086733
MPME02008306
[MPME] marine metagenome; 150 m water sample filtered on 30 um supor filter
789
713
-
Pro
TGG
[ENA]
¢þ
>WENV180292739
OBIV01600112
[OBIV] soil metagenome; Clay
122
46
-
Pro
TGG
[ENA]
¢þ
>WENV180327441
OBKT01139671
[OBKT] soil metagenome; soil
250
174
-
Pro
TGG
[ENA]
¢þ
>WENV180363385
OBNY01039714
[OBNY] marine metagenome; ENVO:00002010
318
242
-
Pro
TGG
[ENA]
¢þ
>WENV181168784
OEIU01783364
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
75
1
-
Pro
TGG
[ENA]
¢þ
>WENV183702770
PDVJ01000079
[PDVJ] alkali sediment metagenome; glacial lake sediment
505
581
+
Pro
TGG
[ENA]
¢þ
>WENV183703046
PDVJ01002006
[PDVJ] alkali sediment metagenome; glacial lake sediment
273
197
-
Pro
TGG
[ENA]
¢þ
>WENV183804363
PVBE010923187
[PVBE] marine metagenome; water
172744
172820
+
Pro
TGG
[ENA]
¢þ
>WENV170701001
LKGT01000717
[LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP
863
787
-
Pro
TGG
[ENA]
¢þ
>WENV170978615
MTKZ01056295
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1301
1377
+
Pro
TGG
[ENA]
¢þ
>ENV09003275
ADGO01015410
Compost metagenome contig00001
292
216
-
Pro
TGG
[ENA]
¡û
Identical group No.308257 (2 seq.)
>WENV180015068
FQKF010303787
[FQKF] soil metagenome; Soil
4
78
+
Pro
TGG
[ENA]
¢þ
>ENV09003267
ADGO01014471
Compost metagenome contig00001
536
462
-
Pro
TGG
[ENA]
¡û
Identical group No.375406 (3 seq.)
>WENV180284835
OBID01130765
[OBID] metagenome; sludge
493
417
-
Pro
TGG
[ENA]
¢þ
>WENV183724796
PJQE01069677
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
93
169
+
Pro
TGG
[ENA]
¢þ
>ENV09003109
ADGO01005254
Compost metagenome contig00001
4063
3987
-
Pro
TGG
[ENA]
¡û
Identical group No.385245 (3 seq.)
>WENV181171427
OEIV010226217
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
173
249
+
Pro
TGG
[ENA]
¢þ
>WENV183681572
ORMF010328993
[ORMF] groundwater metagenome; groundwater
688
764
+
Pro
TGG
[ENA]
¢þ
>ENV09003377
ADGO01027277
Compost metagenome contig00001
173
97
-
Pro
TGG
[ENA]
¡û
Identical group No.422091 (2 seq.)
>W1911708781
QOZS01000030
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60015 [QOZS]
11554
11630
+
Pro
TGG
[ENA]
¡û
>ENV09003888
ADGO01203697
Compost metagenome contig00001
388
312
-
Pro
TGG
[ENA]
¡û
Identical group No.441314 (1 seq.)
>ENV09003013
ADGO01001491
Compost metagenome contig00001
79
155
+
Pro
TGG
[ENA]
¡û
Identical group No.441328 (1 seq.)
>ENV09003103
ADGO01004913
Compost metagenome contig00001
267
343
+
Pro
TGG
[ENA]
¡û
Identical group No.441342 (1 seq.)
>ENV09003221
ADGO01011835
Compost metagenome contig00001
309
385
+
Pro
TGG
[ENA]
¡û
Identical group No.441347 (1 seq.)
>ENV09003343
ADGO01022139
Compost metagenome contig00001
144
220
+
Pro
TGG
[ENA]
¡û
Identical group No.441374 (1 seq.)
>ENV09003612
ADGO01105263
Compost metagenome contig00001
253
329
+
Pro
TGG
[ENA]
¡û
Identical group No.441376 (1 seq.)
>ENV09003628
ADGO01112397
Compost metagenome contig00001
182
258
+
Pro
TGG
[ENA]
¡û
Identical group No.441399 (1 seq.)
>ENV09003797
ADGO01179205
Compost metagenome contig00001
420
344
-
Pro
TGG
[ENA]
¡û
Identical group No.441411 (1 seq.)
>ENV09003880
ADGO01202195
Compost metagenome contig00001
384
307
-
Pro
TGG
[ENA]
¡û
Identical group No.441416 (1 seq.)
>ENV09003910
ADGO01211798
Compost metagenome contig00001
244
320
+
Pro
TGG
[ENA]
¡û
Identical group No.441419 (1 seq.)
>ENV09003916
ADGO01212663
Compost metagenome contig00001
124
50
-
Pro
TGG
[ENA]
¡û
Identical group No.641808 (1 seq.)
>ENV09003618
ADGO01107472
Compost metagenome contig00001
17
89
+
Pro
TGG
[ENA]
¡û
Identical group No.772226 (1 seq.)
>ENV09003424
ADGO01038794
Compost metagenome contig00001
193
266
+
Pro
TGG
[ENA]
¡û
Identical group No.772234 (1 seq.)
>ENV09003495
ADGO01067354
Compost metagenome contig00001
178
252
+
Pseudo
TGG
[ENA]
¡û
Identical group No.834041 (1 seq.)
>ENV09003551
ADGO01085669
Compost metagenome contig00001
73
3
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK