tRNA genes clustered and arranged according to each identical group

Compost metagenome contig00001

Anticodon = TGG

HIT: 22 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.243173 (48 seq.)
>W1711713331 MTCZ01000007 Bacteroidota Flavobacterium davisii columnare [MTCZ] 17660 17737 + Pro TGG [ENA] ¡û
>W1711713381 MTCZ01000346 Bacteroidota Flavobacterium davisii columnare [MTCZ] 323 400 + Pro TGG [ENA] ¡û
>W131224655 AUCZ01000002 Bacteroidota Flavobacterium suncheonense DSM 17707 [AUCZ] 29757 29834 + Pro TGG [ENA] ¡û
>W131224678 AUCZ01000006 Bacteroidota Flavobacterium suncheonense DSM 17707 [AUCZ] 177734 177657 - Pro TGG [ENA] ¡û
>WENV180035796 FTLB01010547 [FTLB] metagenome; soil 7875 7800 - Pro TGG [ENA] ¢þ
>WENV180296813 OBJA01003073 [OBJA] soil metagenome; sediment, water from around vicinity 292 217 - Pro TGG [ENA] ¢þ
>WENV180833743 ODKD01000165 [ODKD] human metagenome; G_DNA_Supragingival plaque 493 418 - Pro TGG [ENA] ¢þ
>WENV181007615 ODWE01000298 [ODWE] human metagenome; G_DNA_Supragingival plaque 257 182 - Pro TGG [ENA] ¢þ
>WENV181051260 ODYD01299396 [ODYD] human metagenome; G_DNA_Supragingival plaque 57 132 + Pro TGG [ENA] ¢þ
>WENV181070435 OEAE01001533 [OEAE] human metagenome; G_DNA_Supragingival plaque 489 414 - Pro TGG [ENA] ¢þ
>WENV181178629 OEJT01000098 [OEJT] human metagenome; G_DNA_Supragingival plaque 79 4 - Pro TGG [ENA] ¢þ
>WENV181838593 OGVN01004905 [OGVN] freshwater metagenome; freshwater 732 657 - Pro TGG [ENA] ¢þ
>WENV181844663 OGVW01016678 [OGVW] freshwater metagenome; freshwater 606 681 + Pro TGG [ENA] ¢þ
>WENV183092227 OLKW01000274 [OLKW] soil metagenome; soil 18205 18280 + Pro TGG [ENA] ¢þ
>WENV183729771 PJTR01000068 [PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment 120505 120430 - Pro TGG [ENA] ¢þ
>WENV183731091 PJTS01008660 [PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment 624 549 - Pro TGG [ENA] ¢þ
>C191134768 CP035107 Bacteroidota Ornithobacterium rhinotracheale FARPER-174b [CP035107] 1390816 1390891 + Pro TGG - ¡û
>C191134770 CP035107 Bacteroidota Ornithobacterium rhinotracheale FARPER-174b [CP035107] 1391040 1391115 + Pro TGG - ¡û
>C191210761 LR134404 Bacteroidota Weeksella virosa NCTC11634 [LR134404] 1227822 1227747 - Pro TGG - ¡û
>C191210764 LR134404 Bacteroidota Weeksella virosa NCTC11634 [LR134404] 1227519 1227444 - Pro TGG - ¡û
>C141012313 HE774682 Bacteroidota Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682] 1370953 1371030 + Pro TGG - ¡û
>C141012318 HE774682 Bacteroidota Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682] 2094080 2094157 + Pro TGG - ¡û
>W1910577997 JUIX01000006 Bacteroidota Flavobacterium dauae TCH3-2 [JUIX] 84295 84220 - Pro TGG [ENA] ¡û
>W1910577998 JUIX01000006 Bacteroidota Flavobacterium dauae TCH3-2 [JUIX] 84188 84113 - Pro TGG [ENA] ¡û
>W1910578022 JUIX01000029 Bacteroidota Flavobacterium dauae TCH3-2 [JUIX] 13469 13394 - Pro TGG [ENA] ¡û
>W1911533989 OLKH01000086 Bacteroidota Flavobacterium columnare [OLKH] 1254 1179 - Pro TGG [ENA] ¡û
>W1911533992 OLKH01000086 Bacteroidota Flavobacterium columnare [OLKH] 929 854 - Pro TGG [ENA] ¡û
>W1911534010 OLKH01000102 Bacteroidota Flavobacterium columnare [OLKH] 13236 13161 - Pro TGG [ENA] ¡û
>C151013068 CP006828 Bacteroidota Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828] 325325 325248 - Pro TGG [Ensembl] ¡û
>C151013070 CP006828 Bacteroidota Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828] 325098 325021 - Pro TGG [Ensembl] ¡û
>ENV09003052 ADGO01002594 Compost metagenome contig00001 243 166 - Pro TGG [ENA] ¡û
>C11123809 CP002455 Bacteroidota Weeksella virosa DSM 16922 [CP002455] 1880576 1880651 + Pro TGG [Ensembl] ¡û
>C121010297 CP003283 Bacteroidota Ornithobacterium rhinotracheale DSM 15997 [CP003283] 319081 319004 - Pro TGG [Ensembl] ¡û
>C121010299 CP003283 Bacteroidota Ornithobacterium rhinotracheale DSM 15997 [CP003283] 318854 318777 - Pro TGG [Ensembl] ¡û
>W1610029719 AXDE01000002 Bacteroidota Ornithobacterium rhinotracheale H06-030791 [AXDE] 260404 260327 - Pro TGG [ENA] ¡û
>W1610029721 AXDE01000002 Bacteroidota Ornithobacterium rhinotracheale H06-030791 [AXDE] 260177 260100 - Pro TGG [ENA] ¡û
>W1610535004 JRLV01000001 Bacteroidota Flavobacterium beibuense F44-8 [JRLV] 255055 254978 - Pro TGG [ENA] ¡û
>W1610535015 JRLV01000009 Bacteroidota Flavobacterium beibuense F44-8 [JRLV] 106673 106596 - Pro TGG [ENA] ¡û
>W1610535043 JRLW01000003 Bacteroidota Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW] 197967 198044 + Pro TGG [ENA] ¡û
>W1610535048 JRLW01000004 Bacteroidota Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW] 102246 102323 + Pro TGG [ENA] ¡û
>W1710027089 AXDE01000002 Bacteroidota Ornithobacterium rhinotracheale H06-030791 [AXDE] 260404 260327 - Pro TGG [ENA] ¡û
>W1710027091 AXDE01000002 Bacteroidota Ornithobacterium rhinotracheale H06-030791 [AXDE] 260177 260100 - Pro TGG [ENA] ¡û
>W1710507348 FMVF01000002 Bacteroidota Flavobacterium caeni [FMVF] 96 19 - Pro TGG [ENA] ¡û
>W1710507378 FMVF01000015 Bacteroidota Flavobacterium caeni [FMVF] 96 19 - Pro TGG [ENA] ¡û
>W1710637240 JRLV01000001 Bacteroidota Flavobacterium beibuense F44-8 [JRLV] 255055 254978 - Pro TGG [ENA] ¡û
>W1710637251 JRLV01000009 Bacteroidota Flavobacterium beibuense F44-8 [JRLV] 106673 106596 - Pro TGG [ENA] ¡û
>W1710637279 JRLW01000003 Bacteroidota Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW] 197967 198044 + Pro TGG [ENA] ¡û
>W1710637284 JRLW01000004 Bacteroidota Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW] 102246 102323 + Pro TGG [ENA] ¡û
Identical group No.268740 (1 seq.)
>ENV09003407 ADGO01033028 Compost metagenome contig00001 170 247 + Pro TGG [ENA] ¡û
Identical group No.283623 (14 seq.)
>WENV180017714 FSXN01001073 [FSXN] metagenome; soil 3735 3811 + Pro TGG [ENA] ¢þ
>WENV180018703 FTAG01002111 [FTAG] metagenome; soil 2556 2632 + Pro TGG [ENA] ¢þ
>WENV180022166 FTFS01000812 [FTFS] metagenome; soil 1020 944 - Pro TGG [ENA] ¢þ
>WENV180022685 FTGO01000415 [FTGO] metagenome; soil 25 101 + Pro TGG [ENA] ¢þ
>WENV180024661 FTII01139067 [FTII] metagenome; soil 5 81 + Pro TGG [ENA] ¢þ
>WENV180028143 FTJA01000049 [FTJA] metagenome; soil 2 78 + Pro TGG [ENA] ¢þ
>WENV180028192 FTJA01002742 [FTJA] metagenome; soil 2111 2187 + Pro TGG [ENA] ¢þ
>WENV180031972 FTJU01002218 [FTJU] metagenome; soil 27562 27486 - Pro TGG [ENA] ¢þ
>WENV180035437 FTKZ01000751 [FTKZ] metagenome; soil 1998 1922 - Pro TGG [ENA] ¢þ
>W141230451 BATC01000002 Alphaproteobacteria Brevundimonas abyssalis TAR-001 [BATC] 49037 49113 + Pro TGG [ENA] ¡û
>W1911738155 QUOQ01000003 Alphaproteobacteria Brevundimonas lutea NS26 [QUOQ] 104237 104161 - Pro TGG [ENA] ¡û
>W1810000945 BEWU01000003 Alphaproteobacteria Brevundimonas denitrificans TAR-002 [BEWU] 11415 11491 + Pro TGG [ENA] ¡û
>ENV09003475 ADGO01059801 Compost metagenome contig00001 415 339 - Pro TGG [ENA] ¡û
>W1710601585 FUXL01000001 Alphaproteobacteria Consotaella salsifontis USBA 369 [FUXL] 84091 84167 + Pro TGG [ENA] ¡û
Identical group No.284349 (12 seq.)
>WENV180086192 MPMD02434438 [MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter 19992 20068 + Pro TGG [ENA] ¢þ
>WENV180086733 MPME02008306 [MPME] marine metagenome; 150 m water sample filtered on 30 um supor filter 789 713 - Pro TGG [ENA] ¢þ
>WENV180292739 OBIV01600112 [OBIV] soil metagenome; Clay 122 46 - Pro TGG [ENA] ¢þ
>WENV180327441 OBKT01139671 [OBKT] soil metagenome; soil 250 174 - Pro TGG [ENA] ¢þ
>WENV180363385 OBNY01039714 [OBNY] marine metagenome; ENVO:00002010 318 242 - Pro TGG [ENA] ¢þ
>WENV181168784 OEIU01783364 [OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex 75 1 - Pro TGG [ENA] ¢þ
>WENV183702770 PDVJ01000079 [PDVJ] alkali sediment metagenome; glacial lake sediment 505 581 + Pro TGG [ENA] ¢þ
>WENV183703046 PDVJ01002006 [PDVJ] alkali sediment metagenome; glacial lake sediment 273 197 - Pro TGG [ENA] ¢þ
>WENV183804363 PVBE010923187 [PVBE] marine metagenome; water 172744 172820 + Pro TGG [ENA] ¢þ
>WENV170701001 LKGT01000717 [LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP 863 787 - Pro TGG [ENA] ¢þ
>WENV170978615 MTKZ01056295 [MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant 1301 1377 + Pro TGG [ENA] ¢þ
>ENV09003275 ADGO01015410 Compost metagenome contig00001 292 216 - Pro TGG [ENA] ¡û
Identical group No.308257 (2 seq.)
>WENV180015068 FQKF010303787 [FQKF] soil metagenome; Soil 4 78 + Pro TGG [ENA] ¢þ
>ENV09003267 ADGO01014471 Compost metagenome contig00001 536 462 - Pro TGG [ENA] ¡û
Identical group No.375406 (3 seq.)
>WENV180284835 OBID01130765 [OBID] metagenome; sludge 493 417 - Pro TGG [ENA] ¢þ
>WENV183724796 PJQE01069677 [PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane 93 169 + Pro TGG [ENA] ¢þ
>ENV09003109 ADGO01005254 Compost metagenome contig00001 4063 3987 - Pro TGG [ENA] ¡û
Identical group No.385245 (3 seq.)
>WENV181171427 OEIV010226217 [OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex 173 249 + Pro TGG [ENA] ¢þ
>WENV183681572 ORMF010328993 [ORMF] groundwater metagenome; groundwater 688 764 + Pro TGG [ENA] ¢þ
>ENV09003377 ADGO01027277 Compost metagenome contig00001 173 97 - Pro TGG [ENA] ¡û
Identical group No.422091 (2 seq.)
>W1911708781 QOZS01000030 Alphaproteobacteria Rhodospirillaceae bacterium SYSU D60015 [QOZS] 11554 11630 + Pro TGG [ENA] ¡û
>ENV09003888 ADGO01203697 Compost metagenome contig00001 388 312 - Pro TGG [ENA] ¡û
Identical group No.441314 (1 seq.)
>ENV09003013 ADGO01001491 Compost metagenome contig00001 79 155 + Pro TGG [ENA] ¡û
Identical group No.441328 (1 seq.)
>ENV09003103 ADGO01004913 Compost metagenome contig00001 267 343 + Pro TGG [ENA] ¡û
Identical group No.441342 (1 seq.)
>ENV09003221 ADGO01011835 Compost metagenome contig00001 309 385 + Pro TGG [ENA] ¡û
Identical group No.441347 (1 seq.)
>ENV09003343 ADGO01022139 Compost metagenome contig00001 144 220 + Pro TGG [ENA] ¡û
Identical group No.441374 (1 seq.)
>ENV09003612 ADGO01105263 Compost metagenome contig00001 253 329 + Pro TGG [ENA] ¡û
Identical group No.441376 (1 seq.)
>ENV09003628 ADGO01112397 Compost metagenome contig00001 182 258 + Pro TGG [ENA] ¡û
Identical group No.441399 (1 seq.)
>ENV09003797 ADGO01179205 Compost metagenome contig00001 420 344 - Pro TGG [ENA] ¡û
Identical group No.441411 (1 seq.)
>ENV09003880 ADGO01202195 Compost metagenome contig00001 384 307 - Pro TGG [ENA] ¡û
Identical group No.441416 (1 seq.)
>ENV09003910 ADGO01211798 Compost metagenome contig00001 244 320 + Pro TGG [ENA] ¡û
Identical group No.441419 (1 seq.)
>ENV09003916 ADGO01212663 Compost metagenome contig00001 124 50 - Pro TGG [ENA] ¡û
Identical group No.641808 (1 seq.)
>ENV09003618 ADGO01107472 Compost metagenome contig00001 17 89 + Pro TGG [ENA] ¡û
Identical group No.772226 (1 seq.)
>ENV09003424 ADGO01038794 Compost metagenome contig00001 193 266 + Pro TGG [ENA] ¡û
Identical group No.772234 (1 seq.)
>ENV09003495 ADGO01067354 Compost metagenome contig00001 178 252 + Pseudo TGG [ENA] ¡û
Identical group No.834041 (1 seq.)
>ENV09003551 ADGO01085669 Compost metagenome contig00001 73 3 - Pro TGG [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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