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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Corals, microbial fraction from Porites astreoides tissues (SRP000144)
Anticodon = GCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.542016 (2 seq.)
>ENV08001139
ABMO01167656
Coral metagenome; microbial fraction from Porites astreoides tissues; contains sequences from fungi (presumably spores), bacteria, viruses, and the coral mitochondria
8
82
+
Cys
GCA
[ENA]
¡û
>SRA1001189
SRR001052.309093
Corals, microbial fraction from Porites astreoides tissues (SRP000144)
8
82
+
Cys
GCA
[SRA]
Identical group No.707153 (4 seq.)
>WENV181235001
OFEW01012977
[OFEW] coral metagenome; NA
1165
1238
+
Cys
GCA
[ENA]
¢þ
>ENV08001146
ABMO01256371
Coral metagenome; microbial fraction from Porites astreoides tissues; contains sequences from fungi (presumably spores), bacteria, viruses, and the coral mitochondria
83
10
-
Cys
GCA
[ENA]
¡û
>SRA1001130
SRR001052.195338
Corals, microbial fraction from Porites astreoides tissues (SRP000144)
83
10
-
Cys
GCA
[SRA]
>SRA1001163
SRR001052.241540
Corals, microbial fraction from Porites astreoides tissues (SRP000144)
83
10
-
Cys
GCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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