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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Corals, microbial fraction from Porites astreoides tissues (SRP000144)
Anticodon = GTC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.707133 (2 seq.)
>ENV08001006
ABMO01011227
Coral metagenome; microbial fraction from Porites astreoides tissues; contains sequences from fungi (presumably spores), bacteria, viruses, and the coral mitochondria
15
86
+
Asp
GTC
[ENA]
¡û
>SRA1001177
SRR001052.279531
Corals, microbial fraction from Porites astreoides tissues (SRP000144)
15
86
+
Asp
GTC
[SRA]
Identical group No.707144 (4 seq.)
>WENV180036257
FTLB01817942
[FTLB] metagenome; soil
1481
1410
-
Asp
GTC
[ENA]
¢þ
>WENV180550854
OCJC01001608
[OCJC] human gut metagenome; Infant 1 DOL 6 skin
295
224
-
Asp
GTC
[ENA]
¢þ
>ENV08001097
ABMO01078813
Coral metagenome; microbial fraction from Porites astreoides tissues; contains sequences from fungi (presumably spores), bacteria, viruses, and the coral mitochondria
89
17
-
Asp
GTC
[ENA]
¡û
>SRA1001048
SRR001052.28620
Corals, microbial fraction from Porites astreoides tissues (SRP000144)
89
17
-
Asp
GTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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