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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cryptophyta
Anticodon = CCG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462882 (1 seq.)
>CHL090100286
AF041468
Cryptophyta
Guillardia theta
50651
50579
-
Arg
CCG
[ENA]
¡û
Identical group No.540113 (5 seq.)
>WENV180396194
OBPU01063944
[OBPU] marine metagenome; ENVO:00002010
149
75
-
Arg
CCG
[ENA]
¢þ
>WENV170276019
CERM01242097
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4360
4434
+
Arg
CCG
[ENA]
¢þ
>WENV170536328
CEWP01169189
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
856
782
-
Arg
CCG
[ENA]
¢þ
>WENV170818527
MDSX01073619
[MDSX] marine metagenome; seawater
4400
4474
+
Arg
CCG
[ENA]
¢þ
>CHL090103041
EF508371
Cryptophyta
Rhodomonas salina
56152
56078
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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