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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cryptophyta
Anticodon = TCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782144 (8 seq.)
>WENV180585066
OCOK01001091
[OCOK] marine metagenome; ENVO:00002010
490
418
-
Gly
TCC
[ENA]
¢þ
>WENV170275328
CERM01080277
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1504
1574
+
Gly
TCC
[ENA]
¢þ
>WENV170534317
CEWO01199877
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1624
1552
-
Gly
TCC
[ENA]
¢þ
>WENV170536929
CEWP01331808
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
977
907
-
Gly
TCC
[ENA]
¢þ
>WENV170811925
MDSW01174906
[MDSW] marine metagenome; seawater
10523
10595
+
Gly
TCC
[ENA]
¢þ
>WENV170815175
MDSX01005773
[MDSX] marine metagenome; seawater
1291
1221
-
Gly
TCC
[ENA]
¢þ
>CHL090100284
AF041468
Cryptophyta
Guillardia theta
57218
57147
-
Gly
TCC
[ENA]
¡û
>CHL090103039
EF508371
Cryptophyta
Rhodomonas salina
64233
64163
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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