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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cryptophyta
Anticodon = TGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281294 (1 seq.)
>CHL090100277
AF041468
Cryptophyta
Guillardia theta
53999
54072
+
Pro
TGG
[ENA]
¡û
Identical group No.351250 (6 seq.)
>WENV180000006
BDQC01000958
[BDQC] viral metagenome; marine pelagic feature
1039
963
-
Pro
TGG
[ENA]
¢þ
>WENV170276021
CERM01242097
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
798
725
-
Pro
TGG
[ENA]
¢þ
>WENV170533322
CEWO01118269
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2164
2237
+
Pro
TGG
[ENA]
¢þ
>WENV170809364
MDSW01130620
[MDSW] marine metagenome; seawater
1911
1838
-
Pro
TGG
[ENA]
¢þ
>WENV170818534
MDSX01073619
[MDSX] marine metagenome; seawater
838
765
-
Pro
TGG
[ENA]
¢þ
>CHL090103033
EF508371
Cryptophyta
Rhodomonas salina
59694
59767
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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