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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = ACG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.1547 (1 seq.)
>PL171000516
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
1879
1782
-
Pseudo
ACG
[ENA]
¡û
Identical group No.262123 (1 seq.)
>PL191000010
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
73429
73505
+
Arg
ACG
[ENA]
¡û
Identical group No.303219 (6 seq.)
>W131058324
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4839668
4839744
+
Arg
ACG
[ENA]
¡û
>W1711711446
MTAX01000103
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
23929
24005
+
Arg
ACG
[ENA]
¡û
>PL171000010
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
51516
51440
-
Arg
ACG
[Ensembl]
¡û
>PL171000099
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
22082
22158
+
Arg
ACG
[ENA]
¡û
>PL171000132
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
4628
4704
+
Arg
ACG
[ENA]
¡û
>C181004786
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1811022
1810947
-
Arg
ACG
-
¡û
Identical group No.347777 (4 seq.)
>WENV171003646
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
3144
3068
-
Arg
ACG
[ENA]
¢þ
>PL191000521
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20845
20770
-
Arg
ACG
[ENA]
¡û
>C181137722
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4437593
4437668
+
Arg
ACG
-
¡û
>W1911118834
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19791
19866
+
Arg
ACG
[ENA]
¡û
Identical group No.361471 (1 seq.)
>PL171000120
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
171561
171487
-
Arg
ACG
[ENA]
¡û
Identical group No.370698 (1 seq.)
>PL191000386
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
3062
2987
-
Arg
ACG
[ENA]
¡û
Identical group No.422969 (1 seq.)
>PL171000161
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
3673
3597
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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