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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = CAA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254691 (2 seq.)
>PL171000015
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
51089
51012
-
Leu
CAA
[Ensembl]
¡û
>PL171000137
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
5055
5132
+
Leu
CAA
[ENA]
¡û
Identical group No.256066 (1 seq.)
>PL191000390
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
2655
2580
-
Leu
CAA
[ENA]
¡û
Identical group No.262124 (1 seq.)
>PL191000013
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
73755
73832
+
Leu
CAA
[ENA]
¡û
Identical group No.265389 (1 seq.)
>PL171000164
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
3333
3255
-
Leu
CAA
[ENA]
¡û
Identical group No.265391 (1 seq.)
>PL171000201
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
11545
11622
+
Leu
CAA
[ENA]
¡û
Identical group No.266446 (1 seq.)
>PL171000103
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
22488
22565
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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