This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = CAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181022 (118 seq.)
>W1710792868
LJOS01000010
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
75651
75570
-
Leu
CAG
[ENA]
¡û
>W1710792995
LJOW01000014
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
24224
24305
+
Leu
CAG
[ENA]
¡û
>W1710793055
LJOX01000011
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
3565
3646
+
Leu
CAG
[ENA]
¡û
>W1710793092
LJOY01000001
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
157437
157356
-
Leu
CAG
[ENA]
¡û
>W1711092425
LTEC01000001
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
149863
149944
+
Leu
CAG
[ENA]
¡û
>W1711116530
LUBZ01000012
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
33069
32986
-
Leu
CAG
[ENA]
¡û
>W1711120910
LUHJ01000014
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
6225
6306
+
Leu
CAG
[ENA]
¡û
>W1711261772
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
2499798
2499881
+
Leu
CAG
[ENA]
¡û
>W1711283604
LZQD01000002
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
530213
530294
+
Leu
CAG
[ENA]
¡û
>W1711335583
MBQX01000047
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
181566
181483
-
Leu
CAG
[ENA]
¡û
>W1711335613
MBQY01000012
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
82741
82824
+
Leu
CAG
[ENA]
¡û
>W1711335791
MBRD01000033
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
500864
500945
+
Leu
CAG
[ENA]
¡û
>W1711666575
MRCC01000002
Cyanobacteriota
Chroogloeocystis siderophila 5.2 s.c.1 [MRCC]
24109
24028
-
Leu
CAG
[ENA]
¡û
>W1711666723
MRCF01000022
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
32943
32862
-
Leu
CAG
[ENA]
¡û
>W1711711319
MTAV01000016
Cyanobacteriota
Nostoc sp. T09 [MTAV]
18087
18006
-
Leu
CAG
[ENA]
¡û
>W1711711362
MTAW01000095
Cyanobacteriota
Nostoc sp. 106C [MTAW]
44587
44506
-
Leu
CAG
[ENA]
¡û
>W1711711430
MTAX01000060
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
3757
3676
-
Leu
CAG
[ENA]
¡û
>PL171000150
AP018223
Cyanobacteria
Nostoc linckia NIES-25 plasmid:plasmid1
378455
378536
+
Leu
CAG
[ENA]
¡û
>W131036542
ALVW01000010
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
427873
427792
-
Leu
CAG
[ENA]
¡û
>W131058314
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
3417244
3417328
+
Leu
CAG
[ENA]
¡û
>W131065852
ANNX01000113
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
67003
67084
+
Leu
CAG
[ENA]
¡û
>W131110103
APIY01000185
Cyanobacteriota
Dolichospermum circinale AWQC131C [APIY]
7282
7363
+
Leu
CAG
[ENA]
¡û
>W131110156
APIZ01000287
Cyanobacteriota
Dolichospermum circinale AWQC310F [APIZ]
2106
2025
-
Leu
CAG
[ENA]
¡û
>C001202
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
1777233
1777314
+
Leu
CAG
[Ensembl]
¡û
>C015268
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
185099
185183
+
Leu
CAG
[Ensembl]
¡û
>W141021389
AJLM01000031
Cyanobacteriota
Chlorogloeopsis fritschii PCC 9212 [AJLM]
38562
38481
-
Leu
CAG
[ENA]
¡û
>W141021426
AJLN01000049
Cyanobacteriota
Chlorogloeopsis fritschii PCC 6912 [AJLN]
60265
60346
+
Leu
CAG
[ENA]
¡û
>W141022933
AJWF01000012
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
1313055
1312974
-
Leu
CAG
[ENA]
¡û
>w002293
AAAY02000091
Cyanobacteriota
Nostoc punctiforme [AAAY]
32511
32595
+
Leu
CAG
[ENA]
¡û
>W141038378
ALVT01000014
Cyanobacteriota
Fischerella sp. PCC 9605 [ALVT]
214545
214626
+
Leu
CAG
[ENA]
¡û
>W141038410
ALVU02000001
Cyanobacteriota
Synechocystis sp. PCC 7509 [ALVU]
4146366
4146285
-
Leu
CAG
[ENA]
¡û
>W141038647
ALWA01000039
Cyanobacteriota
cyanobacterium PCC 7702 [ALWA]
161623
161704
+
Leu
CAG
[ENA]
¡û
>W141038754
ALWD01000081
Cyanobacteriota
[Scytonema hofmanni] UTEX B 1581 UTEX 2349 [ALWD]
116227
116308
+
Leu
CAG
[ENA]
¡û
>WENV181411062
OGCI01011734
[OGCI] hot springs metagenome; Hot spring water
2148
2229
+
Leu
CAG
[ENA]
¢þ
>WENV181841076
OGVQ01000125
[OGVQ] freshwater metagenome; freshwater
13622
13541
-
Leu
CAG
[ENA]
¢þ
>C08006910
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
7076421
7076502
+
Leu
CAG
[Ensembl]
¡û
>WENV170983864
MWVV01106354
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
602
521
-
Leu
CAG
[ENA]
¢þ
>WENV170994606
MWWE01015023
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
568
487
-
Leu
CAG
[ENA]
¢þ
>WENV170999013
MWWJ01208133
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
289
373
+
Leu
CAG
[ENA]
¢þ
>C181004780
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1842247
1842166
-
Leu
CAG
-
¡û
>C181078439
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
3253722
3253641
-
Leu
CAG
-
¡û
>C181105260
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
3433335
3433254
-
Leu
CAG
-
¡û
>C181137792
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
603974
604055
+
Leu
CAG
-
¡û
>C191001287
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
2905104
2905023
-
Leu
CAG
-
¡û
>W09101158
AAEA01000010
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
73679
73760
+
Leu
CAG
[ENA]
¡û
>W141805226
JPKF01000001
Cyanobacteriota
Calothrix sp. 336/3 [JPKF]
1501757
1501838
+
Leu
CAG
[ENA]
¡û
>W1910008401
BDGE01000040
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
36775
36856
+
Leu
CAG
[ENA]
¡û
>W1910020491
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
1127727
1127808
+
Leu
CAG
[ENA]
¡û
>W1910175500
BJCE01000028
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
1993
2074
+
Leu
CAG
[ENA]
¡û
>W1910175541
BJCF01000005
Cyanobacteriota
Dolichospermum planctonicum NIES-80 [BJCF]
80300
80381
+
Leu
CAG
[ENA]
¡û
>W1910596190
LAGX01000039
Cyanobacteriota
Nostoc linckia z1 [LAGX]
10492
10573
+
Leu
CAG
[ENA]
¡û
>W1910596271
LAGY01000036
Cyanobacteriota
Nostoc linckia z2 [LAGY]
10524
10605
+
Leu
CAG
[ENA]
¡û
>W1910596375
LAGZ01000036
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
11044
11125
+
Leu
CAG
[ENA]
¡û
>W1910596458
LAHA01000034
Cyanobacteriota
Nostoc linckia z4 [LAHA]
44347
44428
+
Leu
CAG
[ENA]
¡û
>W1910596517
LAHB01000035
Cyanobacteriota
Nostoc linckia z6 [LAHB]
11952
12033
+
Leu
CAG
[ENA]
¡û
>W1910596587
LAHC01000028
Cyanobacteriota
Nostoc linckia z7 [LAHC]
66691
66610
-
Leu
CAG
[ENA]
¡û
>W1910596671
LAHD01000024
Cyanobacteriota
Nostoc linckia z8 [LAHD]
66670
66589
-
Leu
CAG
[ENA]
¡û
>W1910596749
LAHE01000010
Cyanobacteriota
Nostoc linckia z9 [LAHE]
84500
84419
-
Leu
CAG
[ENA]
¡û
>W1910596902
LAHF01000182
Cyanobacteriota
Nostoc linckia z13 [LAHF]
10393
10474
+
Leu
CAG
[ENA]
¡û
>W1910596996
LAHG01000183
Cyanobacteriota
Nostoc linckia z14 [LAHG]
10529
10610
+
Leu
CAG
[ENA]
¡û
>W1910597071
LAHH01000230
Cyanobacteriota
Nostoc linckia z15 [LAHH]
7210
7291
+
Leu
CAG
[ENA]
¡û
>W1910597159
LAHI01000153
Cyanobacteriota
Nostoc linckia z16 [LAHI]
10506
10587
+
Leu
CAG
[ENA]
¡û
>W1910597252
LAHJ01000151
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
10509
10590
+
Leu
CAG
[ENA]
¡û
>W1910646697
LWSY01000170
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
15091
15172
+
Leu
CAG
[ENA]
¡û
>W1910792683
MRBZ01000058
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
35235
35154
-
Leu
CAG
[ENA]
¡û
>W1910805286
MTPU01000054
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
192034
191951
-
Leu
CAG
[ENA]
¡û
>W1910812555
MVDI01000007
Cyanobacteriota
Chroococcidiopsis sp. TS-821 [MVDI]
183758
183677
-
Leu
CAG
[ENA]
¡û
>W1910859287
NBYN01000054
Cyanobacteriota
Cylindrospermopsis raciborskii CENA303 [NBYN]
232445
232362
-
Leu
CAG
[ENA]
¡û
>W1910943157
NJHS01000004
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
181410
181327
-
Leu
CAG
[ENA]
¡û
>W1910943200
NJHT01000006
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
12404
12487
+
Leu
CAG
[ENA]
¡û
>W1910943241
NJHU01000013
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
12387
12470
+
Leu
CAG
[ENA]
¡û
>W1910943310
NJHV01000595
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
65029
64946
-
Leu
CAG
[ENA]
¡û
>W1910943314
NJHW01000002
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
17065
17148
+
Leu
CAG
[ENA]
¡û
>W1910943361
NJHX01000019
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
106458
106375
-
Leu
CAG
[ENA]
¡û
>W1910943396
NJHY01000001
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
17091
17174
+
Leu
CAG
[ENA]
¡û
>W1910943437
NJHZ01000004
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
16688
16771
+
Leu
CAG
[ENA]
¡û
>W1910943509
NJIA01000279
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
181188
181105
-
Leu
CAG
[ENA]
¡û
>W1911153653
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
2140414
2140497
+
Leu
CAG
[ENA]
¡û
>W1911153693
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
2403923
2404006
+
Leu
CAG
[ENA]
¡û
>W1911581767
PGEM01000025
Cyanobacteriota
Cuspidothrix issatschenkoi CHARLIE-1 [PGEM]
64157
64238
+
Leu
CAG
[ENA]
¡û
>W1810076212
PEIG01000008
Cyanobacteriota
Gloeocapsopsis sp. IPPAS B-1203 IPPAS B-1203 [PEIG]
179851
179768
-
Leu
CAG
[ENA]
¡û
>W1810296728
PTJN01000134
Cyanobacteriota
Gloeocapsopsis dulcis AAB1 [PTJN]
5225
5308
+
Leu
CAG
[ENA]
¡û
>C151081759
CP011382
Cyanobacteriota
Calothrix sp. 336/3 [CP011382]
1499758
1499839
+
Leu
CAG
[Ensembl]
¡û
>W10106008
ACYA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
26973
27056
+
Leu
CAG
[ENA]
¡û
>W10106055
ACYB01000019
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
54482
54565
+
Leu
CAG
[ENA]
¡û
>W11108331
ACYA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
26973
27056
+
Leu
CAG
[ENA]
¡û
>W11108378
ACYB01000019
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
54482
54565
+
Leu
CAG
[ENA]
¡û
>C11115556
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
4591597
4591516
-
Leu
CAG
[Ensembl]
¡û
>W1511013870
JHEG02000048
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
1483776
1483695
-
Leu
CAG
[ENA]
¡û
>W1511397112
JTCM01000043
Cyanobacteriota
Hassalia byssoidea VB512170 [JTCM]
903031
903112
+
Leu
CAG
[ENA]
¡û
>W1511501708
JXCB01000004
Cyanobacteriota
Tolypothrix campylonemoides VB511288 [JXCB]
309954
310035
+
Leu
CAG
[ENA]
¡û
>W1511535272
JYON01000001
Cyanobacteriota
Aliterella atlantica CENA595 [JYON]
93230
93311
+
Leu
CAG
[ENA]
¡û
>C161002520
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
6236297
6236216
-
Leu
CAG
[Ensembl]
¡û
>C161038903
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
5312696
5312777
+
Leu
CAG
[Ensembl]
¡û
>W1610003523
AGCR01000005
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
266977
266896
-
Leu
CAG
[ENA]
¡û
>W1610084861
CDHJ01000098
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
33242
33161
-
Leu
CAG
[ENA]
¡û
>C131004159
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
5322999
5322918
-
Leu
CAG
[Ensembl]
¡û
>C131004282
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
5037210
5037129
-
Leu
CAG
[Ensembl]
¡û
>C131004962
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
392618
392537
-
Leu
CAG
[Ensembl]
¡û
>C131004976
CP003646
Cyanobacteriota
Gloeocapsa sp. PCC 7428 [CP003646]
3842476
3842557
+
Leu
CAG
[Ensembl]
¡û
>C131005064
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
5064394
5064475
+
Leu
CAG
[Ensembl]
¡û
>C131010299
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
4592090
4592171
+
Leu
CAG
[Ensembl]
¡û
>W1610656783
LJOR01000008
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
64348
64429
+
Leu
CAG
[ENA]
¡û
>W1610656832
LJOS01000010
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
75651
75570
-
Leu
CAG
[ENA]
¡û
>W1610656873
LJOT01000037
Cyanobacteriota
Anabaena sp. CRKS33 [LJOT]
3069
2988
-
Leu
CAG
[ENA]
¡û
>W1610656999
LJOW01000014
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
24224
24305
+
Leu
CAG
[ENA]
¡û
>W1610657059
LJOX01000011
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
3565
3646
+
Leu
CAG
[ENA]
¡û
>W1610657096
LJOY01000001
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
157437
157356
-
Leu
CAG
[ENA]
¡û
>W1610926463
LTEC01000001
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
149863
149944
+
Leu
CAG
[ENA]
¡û
>W1610927772
LUBZ01000012
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
33069
32986
-
Leu
CAG
[ENA]
¡û
>W1610931023
LUFH01001111
Cyanobacteriota
Sphaerospermopsis aphanizomenoides BCCUSP55 [LUFH]
1371
1290
-
Leu
CAG
[ENA]
¡û
>W1610932123
LUHI01000044
Cyanobacteriota
Anabaena sp. CA = ATCC 33047 [LUHI]
377961
378042
+
Leu
CAG
[ENA]
¡û
>W1610932147
LUHJ01000014
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
6225
6306
+
Leu
CAG
[ENA]
¡û
>W1611023747
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
2499798
2499881
+
Leu
CAG
[ENA]
¡û
>W1611066498
MBRD01000033
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
500864
500945
+
Leu
CAG
[ENA]
¡û
>W1710004143
AGCR01000005
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
266977
266896
-
Leu
CAG
[ENA]
¡û
>W1710088058
BDUC01000006
Cyanobacteriota
Tolypothrix sp. NIES-4075 [BDUC]
319628
319709
+
Leu
CAG
[ENA]
¡û
>W1710089723
CDHJ01000098
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
33242
33161
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK