This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = CAT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.620877 (1 seq.)
>PL171000158
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
4107
4032
-
Met
CAT
[ENA]
¡û
Identical group No.713252 (1 seq.)
>PL171000116
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
172124
172050
-
Met
CAT
[ENA]
¡û
Identical group No.719265 (1 seq.)
>PL191000382
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
3595
3521
-
Met
CAT
[ENA]
¡û
Identical group No.744240 (1 seq.)
>PL191000008
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
71786
71860
+
Met
CAT
[ENA]
¡û
Identical group No.761525 (1 seq.)
>PL171000095
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
21422
21496
+
Met
CAT
[ENA]
¡û
Identical group No.761527 (1 seq.)
>PL171000513
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
2855
2781
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK